PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g05760.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 289aa MW: 31451.9 Da PI: 6.5807

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g05760.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.4	0.00047	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Vradi06g05760.1 137 FSCNYCKRKFFSSQALGGHQNAH 159 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.24E-6	135	164	No hit	No description
PROSITE profile	PS50157	11.323	137	164	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MWILPSNFVS SHQCLPRFAS TKICLSSQAS RMKPNFDLEV EAHAEYESEV SSQVASNVSI 60 QETSIGPCSD SLTNISHTTN PIGSHPNSDA ISLDLTLNFK NSEPGGRDSI GFSFSSTSES 120 SNEPASQTTA ATISRVFSCN YCKRKFFSSQ ALGGHQNAHK RERTLAKRAL RMGFFSERYA 180 SLASLPLHGS FRSLGVKAHS SLHHGFSPTM RPPEIKSNAR FDQGYVGIPI FLEDDESDLL 240 WPGSFRQVVE AGDSHQNFIL TGSSDLSFTG VNPPVDIENS TPDLTLKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g05760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014502658.1	0.0	zinc finger protein 4
Refseq	XP_014502659.1	0.0	zinc finger protein 4
Refseq	XP_014502660.1	0.0	zinc finger protein 4
Refseq	XP_014502662.1	0.0	zinc finger protein 4
Refseq	XP_014502663.1	0.0	zinc finger protein 4
Refseq	XP_022637730.1	0.0	zinc finger protein 4
Refseq	XP_022637731.1	0.0	zinc finger protein 4
Refseq	XP_022637732.1	0.0	zinc finger protein 4
Swissprot	Q39263	2e-51	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A1S3U9G1	0.0	A0A1S3U9G1_VIGRR; zinc finger protein 4
STRING	GLYMA14G39280.4	1e-168	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1323	31	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	8e-53	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]