PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g05140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24705.7 Da PI: 5.7566 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.4 | 2.4e-38 | 12 | 110 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC++dCv+apyf +q +++fa+vhk++Gasnv+kll++lp ++r+da+ ++ yeA ar++dP+yG+v++i +lqqq+ +l++e Vradi06g05140.1 12 SCGACKFLRRKCTSDCVFAPYFSYDQaSSHFAAVHKIYGASNVSKLLSHLPIQNRRDAAITISYEALARMHDPIYGCVAHIYALQQQVVNLQEE 105 6***********************9978****************************************************************** PP DUF260 94 lallk 98 +++l+ Vradi06g05140.1 106 IDALG 110 98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.526 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-36 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MPIKTMTGFG SSCGACKFLR RKCTSDCVFA PYFSYDQASS HFAAVHKIYG ASNVSKLLSH 60 LPIQNRRDAA ITISYEALAR MHDPIYGCVA HIYALQQQVV NLQEEIDALG SMVANSTVSV 120 VNSGTVQAPM YSDNGIPYDT LQHDAMRTQY FQNNLANFLS EDGNARALQS FESQMNIELP 180 NAHVEEPSFG DSNSNPLEQF LSGIDQEVFV NHPWFKHNAD IKG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 5 | 108 | 4 | 106 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 5 | 108 | 4 | 106 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g05140.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014503007.1 | 1e-165 | LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 5e-56 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A1S3UAE9 | 1e-163 | A0A1S3UAE9_VIGRR; LOB domain-containing protein 33 | ||||
STRING | XP_007141403.1 | 1e-152 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-56 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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