PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g04100.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 322aa    MW: 37991.6 Da    PI: 5.1572
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g04100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.49.3e-17999196
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ffk++  s    s  +v+p  f+++   g  + +k+++l++ sgr+W vk   r  ++++++++GWk F ++n ++  Df++Fk+dg++ f  +v 
  Vradi06g04100.1  9 FFKIF--SPEKHSETMVIPSCFVKSRgLGRRAIPKDIILRNVSGRVWCVKT--RLVGQKMYFGEGWKVFQEENCIRKADFMLFKYDGTNVF--KVV 98
                     89999..666666679*******99984556799*****************..88888899*************************99888..555 PP

                     E CS
               B3 96 v 96
                     +
  Vradi06g04100.1 99 I 99
                     4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-205103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.0427103IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-187102IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-168100No hitNo description
PfamPF023622.0E-13999IPR003340B3 DNA binding domain
SMARTSM010194.1E-159103IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-7194316IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-7263317IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.033279319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MTTAAKEYFF KIFSPEKHSE TMVIPSCFVK SRGLGRRAIP KDIILRNVSG RVWCVKTRLV  60
GQKMYFGEGW KVFQEENCIR KADFMLFKYD GTNVFKVVIL EQSSRCERRE VEEDEVIDIT  120
GEEENENSED YMMEDEEDID DEDEYYHDDN YTEIEEESEE EHVRSKSHHS RASNRDAEDP  180
HLEDYEFDPQ MYIQHENPYF EAKLYKNRPN ELHVPANILR DRSLTFPEKI TLSRCRCFQS  240
EDTQRKELRN NHCGFSRQTQ MYSKVTKVSE WQDGRVCIKG WTSFCTKNKI KEHDVCICEI  300
VLGKDKIVRT IQVHVLGARN G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g04100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502983.10.0B3 domain-containing protein REM20-like
TrEMBLA0A1S3UAC20.0A0A1S3UAC2_VIGRR; B3 domain-containing protein REM20-like
STRINGXP_007141725.11e-171(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128521124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-14B3 family protein