PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi06g02880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HSF | ||||||||
Protein Properties | Length: 259aa MW: 29788.9 Da PI: 7.3939 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 75 | 1.3e-23 | 26 | 84 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y++++d+ +++++sw +++++fvv + efa+++Lp+yFkh+nf+SFvRQLn+Y Vradi06g02880.1 26 FLTKTYQLVDDPLTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTY 84 9*********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.1E-26 | 17 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.1E-34 | 22 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.17E-22 | 23 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.5E-13 | 26 | 49 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.8E-20 | 26 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-13 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.5E-13 | 77 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MAFTLDRCED SMVFTMDSQK SVPAPFLTKT YQLVDDPLTD HIVSWGDDET TFVVRRPPEF 60 ARDLLPNYFK HNNFSSFVRQ LNTYVRIIKG SKHLLCEIHR RKTPHPYQQH YHMHDQPPQL 120 LQPDENLCWI DTPPLPSPKP GNDILTALSE DNQRLRRKNF MLLSELTHMK NLYNDIIYFI 180 QNHVSPASYE QRSSSAILKL VELESSPQSP NLIRPAKSHI MEKSLVSSSD EPNGSVKLFG 240 VPLCGKKRLH PGNLDQQE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-14 | 16 | 84 | 11 | 78 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00187 | DAP | Transfer from AT1G46264 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi06g02880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014504175.1 | 0.0 | heat stress transcription factor B-4b | ||||
Swissprot | Q9C635 | 3e-70 | HSFB4_ARATH; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A1S3UDR2 | 0.0 | A0A1S3UDR2_VIGRR; heat stress transcription factor B-4b | ||||
STRING | XP_007141514.1 | 1e-174 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1612 | 33 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46264.1 | 1e-72 | heat shock transcription factor B4 |