PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi06g02730.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SRS

Protein Properties

Length: 331aa MW: 33717.9 Da PI: 8.3953

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi06g02730.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.7	3.1e-68	106	266	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 sg+++CqdCGnqakkdC+ +RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa+++ a +s +++ +k++r +++++++s+t++s++++ Vradi06g02730.1 106 SGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLI-ASQTTTTSHTSTSNTTP 198 7889***********************************************99999999999999999999986.88899999***** PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++tss lP +v+++avf+cvrv++v+dg++e+aYq++v+igGhvfkG+LydqG+e+ Vradi06g02730.1 199 PRSFDTSSshqdagfkesLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVEN 266 **999******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.2E-62	108	265	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.7E-27	110	152	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.7E-29	217	264	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MEDSGAFADW AGTGSSTAAA AGGRAVPVDD LSLGFNAGPA APAAATGPTT GMWPRGGGIQ 60 FWQDQGPHQS HYMKKQQQQG LLDQSNTSSG NLVQTSGGLT ASGTSSGGTT CQDCGNQAKK 120 DCTNRRCRTC CKSRGFDCPT HVKSTWVPAA RRRERQLMTA ATAAVAGSSG STSGTKKPRL 180 IASQTTTTSH TSTSNTTPPR SFDTSSSHQD AGFKESLPGQ VRAPAVFKCV RVTAVEDGQD 240 EYAYQAVVKI GGHVFKGFLY DQGVENRDVY PNLSELHLGG GNGGSGSGGS GGVGRNGVSS 300 SSPMMDPSDV YAGSGGGLLG GSSAYGNPMN *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi06g02730.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007141493.1	1e-160	hypothetical protein PHAVU_008G200700g
Swissprot	Q94CK9	2e-82	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	V7B6F1	1e-159	V7B6F1_PHAVU; Uncharacterized protein
STRING	XP_007141493.1	1e-160	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-68	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]