PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g02700.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 579aa    MW: 65319.6 Da    PI: 7.416
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g02700.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-1872127257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +kR   t++ql +Le+++ +++yp++e+++eLA+kl+Lte+q++ WF+ rR k+k+
  Vradi06g02700.1  72 KKRKLKTQSQLFALETFYDEHKYPTEEMKAELAEKLRLTEKQISGWFCHRRLKDKR 127
                      89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-1953127IPR009057Homeodomain-like
PROSITE profilePS5007116.87668128IPR001356Homeobox domain
SMARTSM003891.7E-1870132IPR001356Homeobox domain
SuperFamilySSF466892.91E-1770135IPR009057Homeodomain-like
PfamPF000467.5E-1672127IPR001356Homeobox domain
CDDcd000863.60E-1672127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MKDYSNFHAF QIDCWHRELG SFALGCCNGG CASKLLNLGY LWSGKVSQTE GFKWESSKLQ  60
SEENKVSNDK NKKRKLKTQS QLFALETFYD EHKYPTEEMK AELAEKLRLT EKQISGWFCH  120
RRLKDKRLMK DEAVANGRQD RSSGVIQDRG SGLGQDSCGS SKHADYRYLD AKEVESHDFY  180
NNEISVADMT HRHRSHYPEN VSAVDDTSSE SSSFLQERAF AQGQDPYDME PSRHLTPNGA  240
LPPLNPKGAV NLGYKPSGYL KVKGEIEHAA ITAVKKQLGR HYEEDGPLLG IEFDPLPPGA  300
FECQTEDPAN ETFCVANPPL LNSPEISAAK KHNLSSRYDS HYTKFNSQDL HVERADFGSL  360
HESDFQDKQD KKARQNIKQR QPYYGYTNHV SGRNPFPDLY EDSTGEASGY NSAKNHRMST  420
KHGVEGMRSD SASNHSDHFE EKLAVKTKDL MLHGYDKINP KRIQKSGHVK SKPSSSIRSS  480
RVPVDTEERG LSARMAKEEM IKVEQKAKNT YRDVDGAGRL SNEILVAKRA KVDMLQQYHV  540
KPSPVAEMEK RKIHRSAAEM PSSFSEDETA ETSSSLDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g02700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502850.10.0homeobox-DDT domain protein RLT2 isoform X1
TrEMBLA0A1S3UA000.0A0A1S3UA00_VIGRR; homeobox-DDT domain protein RLT2 isoform X1
STRINGGLYMA14G03850.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-82HB-other family protein