PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g02570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ARF
Protein Properties Length: 835aa    MW: 92280.9 Da    PI: 6.5104
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g02570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.4e-24129230199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  Vradi06g02570.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 218
                      99*****************************8544444..48************************************************..88 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  Vradi06g02570.1 219 EKNQLLLGIRRA 230
                      99999****997 PP
2Auxin_resp121.85.1e-40255338183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Vradi06g02570.1 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.05E-49114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-42122244IPR015300DNA-binding pseudobarrel domain
CDDcd100179.40E-22128229No hitNo description
SMARTSM010191.8E-24129231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548129231IPR003340B3 DNA binding domain
PfamPF023624.7E-22129230IPR003340B3 DNA binding domain
PfamPF065077.1E-35255338IPR010525Auxin response factor
PfamPF023095.4E-6748831IPR033389AUX/IAA domain
SuperFamilySSF542774.45E-6752830No hitNo description
PROSITE profilePS5174520.235759834IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MKLSSSGFNP PGEEEGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNR  60
EVDAHIPNYP NLPPQLICQL HNVTMHADAE TDEVYAQMTL QPLSPQEQKE VYLMPAELGT  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPAQELI ARDLHDNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSVLFIWNEK NQLLLGIRRA NRPQTIMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FPLRLRRPWP TGLPSLYGLK DGDMGIGSPF MWLQGGLGDQ GMQSLNFQGL  420
GVTPWMQPKL DSSMPGLQPE LYQAMASSAF QEMRAMDPSK SSQPLLQFQQ TSNVPSAHTS  480
EVQRQVLPQS QPQSTLLQNF QENQVPAQSQ LLQQQLHRYH PYGDQRQQQQ QLKNLPLQQQ  540
LPNVISPLSN FASGTQSQSP PMQALATHCQ QQSFPEPIRN HISGSDVSPI QSLLGTFSHD  600
GTSQLLNLSG SNSIISSASI LPKQMTVEPQ LPSAAAQCVL PQVENLGTSQ SNVSELAALP  660
PFPGREHSAY HGAADPQSNL LFGINIDPSS LMLQNGMSNL RNMGSVNDSL SLPFSASNCG  720
GTTSTDFPLS SNMTTSSCVD ESGFLQSSEN VDQANTPTGT FVKVHKSGSF GRSLDISKFS  780
SYDELRSELA RMFGLEGQLE DPKTQRSGWQ LVFVDRENDI LLLGDDPWQC YRYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1661335942388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g02570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504340.10.0auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1S3UE760.0A0A1S3UE76_VIGRR; Auxin response factor
STRINGXP_007141460.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]