PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g01570.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 408aa    MW: 47153.6 Da    PI: 8.8824
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g01570.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056485223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ Cg +F+ + +L +H+++H
  Vradi06g01570.1 64 TCEECGVTFKKHAYLLQHMQSH 85
                     6*******************99 PP
2zf-C2H218.26.9e-06137161123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+  dC+ s++rk++L+rH+ +H
  Vradi06g01570.1 137 FVCTvdDCHASYRRKDHLTRHLLLH 161
                      89********************998 PP
3zf-C2H212.60.0004166191123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      +kCp  +C+  Fs + n krH    H
  Vradi06g01570.1 166 FKCPvvNCNIEFSVQGNVKRHVEEiH 191
                      89*******************98777 PP
4zf-C2H218.55.4e-06206230123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++Cp   Cgk+F  +s Lk+H  +H
  Vradi06g01570.1 206 HVCPeiGCGKVFEFPSKLKKHEDSH 230
                      79*******************9888 PP
5zf-C2H2140.00015297322123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+   C+ +Fs ksnL +H +  H
  Vradi06g01570.1 297 FQCEfkGCSCTFSKKSNLDKHKKAvH 322
                      89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355281942IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7836390IPR007087Zinc finger, C2H2
SMARTSM003550.0416385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.1E-56486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-9134163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.2E-6135163No hitNo description
SMARTSM003550.012137161IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221137166IPR007087Zinc finger, C2H2
PROSITE patternPS000280139161IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-4164193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.028166191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993166196IPR007087Zinc finger, C2H2
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-7200230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.016206230IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.034206235IPR007087Zinc finger, C2H2
PROSITE patternPS000280208230IPR007087Zinc finger, C2H2
SMARTSM003550.75238263IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001239261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280240263IPR007087Zinc finger, C2H2
SMARTSM0035535266287IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.7E-7278319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.78E-9281336No hitNo description
SMARTSM003550.0098297322IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.609297327IPR007087Zinc finger, C2H2
PROSITE patternPS000280299322IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.8E-5321351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.2328354IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280330354IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MVEAVTIEER PKRRYIRRYF CQYCGICRSK KTLITSHINS QHKEEDEKAR KETDPETESS  60
KSKTCEECGV TFKKHAYLLQ HMQSHSFEHW IPDNELQNAR GNEFRLDGSV SGRETSCEAP  120
SRMPQSRSLN LRLARPFVCT VDDCHASYRR KDHLTRHLLL HEGKTFKCPV VNCNIEFSVQ  180
GNVKRHVEEI HDGSSTAAAD KSHKQHVCPE IGCGKVFEFP SKLKKHEDSH VKLESIEVVC  240
LEPGCMKHFA NVEGLRAHVN SSHQYMTCDI CGSKQLKKNI KRHLRSHEAD SSSSKTFQCE  300
FKGCSCTFSK KSNLDKHKKA VHLKEKPFRC GFRDCGMRFA YKHVRDNHEK TAKHVFTLGD  360
FEEADAEFRS RPRGGRKREC PTIEMLIRKR VTPPSKLEDW LFMQDRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A2e-1113535120183Aart
2i13_B2e-1113535120183Aart
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g01570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-138AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503589.10.0transcription factor IIIA
SwissprotQ84MZ41e-126TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S3UCA10.0A0A1S3UCA1_VIGRR; transcription factor IIIA
STRINGXP_007142319.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-121transcription factor IIIA