PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g01180.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 540aa    MW: 60794.1 Da    PI: 5.4614
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g01180.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS429.82.2e-1311695391374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l+e L +cA av+ +d+e +++l+++l++++s +g+p+qRl ay++eAL arla+s+s++ykal+++e +     e l+ ++l++e++P+lkf+
  Vradi06g01180.1 169 LREMLCACAIAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPT---GRELLSHMHLLYEICPYLKFG 259
                      6789*****************************************************************9...999999*************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI e ++ge++vHiiDf+i+qG+QW++L+qaLa R +gpp++RiTg+++++s   ++  le +gerL+ +A++ +vpfef++l + + 
  Vradi06g01180.1 260 YMSANGAIAEVMKGETEVHIIDFQINQGIQWVSLIQALAGRHGGPPRIRITGFDDSTSAyaREGGLEIVGERLSALAQSYNVPFEFHAL-EVAP 352
                      *******************************************************998899999************************6.7778 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++e+++L+++pgEa+ Vn++++lh+l+desv+ +++r ++L+l k lsPk+v++veqe+ +++ +F+ rf+e+++yy a+f+s+++ lpre++
  Vradi06g01180.1 353 TEVEIKDLELRPGEAIGVNFAMMLHHLPDESVDGKNHRGRLLRLAKCLSPKIVTLVEQESHTSNLPFFPRFVETMNYYLAIFESIDVALPRENK 446
                      899******************************************************************************************* PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      eri+vE+++l+re+vn+vacegaer+erhe l++Wr+r+++aGF+p+pl++++++++k l + ++++ y++ee++g+l+lgW++++L++ +aWr
  Vradi06g01180.1 447 ERINVEQHCLAREVVNLVACEGAERVERHELLKNWRSRFTMAGFSPYPLNSFITSSIKNLQQSYQGH-YTLEERDGALCLGWMNQALITSCAWR 539
                      *****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.291143520IPR005202Transcription factor GRAS
PfamPF035147.4E-129169539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MMQMSQKHNM SYEAVQNLGS CCFLQSENLD YYSSSDNSSH ATYPSVRTLE QYCTLESSTK  60
NSFPSLNSPT TVSFSPNHSP LSKLQPKSYV LSSHSSLEIT NDSIENESCL THNDNELRHK  120
IRELESAMLG HDADILDMYD TVIPEESDSF LLEAERWKKM MEMISRGDLR EMLCACAIAV  180
AGNDMETTEW LMSELRKMVS VSGNPIQRLG AYMLEALVAR LASSGSTIYK ALKCKEPTGR  240
ELLSHMHLLY EICPYLKFGY MSANGAIAEV MKGETEVHII DFQINQGIQW VSLIQALAGR  300
HGGPPRIRIT GFDDSTSAYA REGGLEIVGE RLSALAQSYN VPFEFHALEV APTEVEIKDL  360
ELRPGEAIGV NFAMMLHHLP DESVDGKNHR GRLLRLAKCL SPKIVTLVEQ ESHTSNLPFF  420
PRFVETMNYY LAIFESIDVA LPRENKERIN VEQHCLAREV VNLVACEGAE RVERHELLKN  480
WRSRFTMAGF SPYPLNSFIT SSIKNLQQSY QGHYTLEERD GALCLGWMNQ ALITSCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-601715396375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g01180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505085.10.0scarecrow-like protein 21
RefseqXP_014505086.10.0scarecrow-like protein 21
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A1S3UGC50.0A0A1S3UGC5_VIGRR; scarecrow-like protein 21
STRINGXP_007142381.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]