PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g00750.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 210aa    MW: 23202.1 Da    PI: 9.8633
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g00750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.91.5e-3258114158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Vradi06g00750.1  58 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGNGGRF 114
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-3556117IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.46957117IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-2859114IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-246082IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068606282IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-2491114IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLHSSSSAPS RRDDCLPHAP QLELISHSFE CASNPYYGYA PYIGMPHARM ALPLEMAQEP  60
VYVNAKQYQG ILRRRQARAK AELEKKLIKV RKPYLHESRH QHAMRRARGN GGRFAKKTEV  120
EASKHTNKEK DTGAAGPVSS PQSVSSSGLG PVPSEVHERL EKHNYANVLQ SSSAFCLHSG  180
ERVEEGDCSG QQRGSISSEQ SSQRRLAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-1958114258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g00750.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014505025.11e-134nuclear transcription factor Y subunit A-1
RefseqXP_022637502.11e-134nuclear transcription factor Y subunit A-1
SwissprotQ945M92e-57NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A1S3UG641e-132A0A1S3UG64_VIGRR; nuclear transcription factor Y subunit A-1
STRINGXP_007142467.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.17e-59nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]