PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g00510.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 544aa    MW: 60681.5 Da    PI: 6.3892
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g00510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.21.2e-1401735431374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++ L++cA+a++++dl +aq+l+ +l++++s +gdp+qRl ay++e+L arla s+s++ykal+++e +   s+e l+++++++ev+P++kf+
  Vradi06g00510.1 173 LKHILVACAKAIADNDLLMAQWLMDELRQMVSVSGDPIQRLGAYMLEGLVARLAASGSSIYKALRCKEPE---SAELLSYMHILYEVCPYFKFG 263
                      6899*****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ eervHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae+++vpfef++ +a + 
  Vradi06g00510.1 264 YMSANGAIAEAMKDEERVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAyaRGGGLHIVGRRLSKLAEHFKVPFEFHA-AAISG 356
                      *******************************************************999899999************************.88899 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       d+++++L v+pgEalaVn++++lh+++desvs++++rd++L+lv+slsPkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr ++
  Vradi06g00510.1 357 CDVQVHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRVHK 450
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ ++ ++k ll++++++ yr+ee++g+l+lgW++r Lv+ +aW+
  Vradi06g00510.1 451 ERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSNR-YRLEERDGALYLGWMNRDLVASCAWK 543
                      *****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.839147524IPR005202Transcription factor GRAS
PfamPF035144.3E-138173543IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MQASEQHRSS SMYYQPLQQI EAYCLPQYGN LNQQLYYHGG SHGTHFSTPS SSELYCTLES  60
SSVAGSFTLY NSPSTVSFSP NGSPISQHDS QSYPPDQYHS PENAYGSPLS GSCITDDLSS  120
FKHKLRELES VMLGPDSDNL DSYDSAISNG NNFASPEMDS WRQTMVAISS KNLKHILVAC  180
AKAIADNDLL MAQWLMDELR QMVSVSGDPI QRLGAYMLEG LVARLAASGS SIYKALRCKE  240
PESAELLSYM HILYEVCPYF KFGYMSANGA IAEAMKDEER VHIIDFQIGQ GSQWITLIQA  300
FAARPGGPPH IRITGIDDSQ SAYARGGGLH IVGRRLSKLA EHFKVPFEFH AAAISGCDVQ  360
VHNLGVRPGE ALAVNFAFML HHMPDESVST QNHRDRLLRL VRSLSPKVVT LVEQESNTNT  420
AAFFPRFLET LDYYTAMFES IDVTLPRVHK ERINVEQHCL ARDLVNIIAC EGVERVERHE  480
VLGKWRSRFA MAGFTPYPLS SLVNGTIKKL LENYSNRYRL EERDGALYLG WMNRDLVASC  540
AWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-5918054225377Protein SCARECROW
5b3h_D7e-5918054225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g00510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504989.10.0scarecrow-like transcription factor PAT1
RefseqXP_014504990.10.0scarecrow-like transcription factor PAT1
RefseqXP_014504991.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S3UGB50.0A0A1S3UGB5_VIGRR; scarecrow-like transcription factor PAT1
STRINGXP_007142502.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]