PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g00500.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 507aa    MW: 55207 Da    PI: 7.3715
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g00500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.51e-26114170259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vkg+ef rsYY+Ct+++C++kk++++s+ ++++++ +  g+Hnh+
  Vradi06g00500.1 114 KDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSN-NGNITDCVSIGQHNHP 170
                      7***************************************9.***************8 PP
2WRKY104.84.6e-33288346159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK vkg+ +prsYYrC+ +gCpvkk+ver+++d k+v++tYeg+H+he
  Vradi06g00500.1 288 VNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHE 346
                      58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-23107172IPR003657WRKY domain
PROSITE profilePS5081119.554108172IPR003657WRKY domain
SuperFamilySSF1182901.96E-22109172IPR003657WRKY domain
SMARTSM007741.2E-28113171IPR003657WRKY domain
PfamPF031064.5E-21114170IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-35273348IPR003657WRKY domain
SuperFamilySSF1182901.44E-28280348IPR003657WRKY domain
PROSITE profilePS5081134.475283348IPR003657WRKY domain
SMARTSM007744.7E-38288347IPR003657WRKY domain
PfamPF031068.7E-26289345IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MVSSEKSEDQ NTPYDKLQHR ASPDSDVTLS QGHDTKNDLS KPEGATSIPS AVAKNEEGKD  60
SDATACALES DQEGSTCSLP PEKHLQSPDT LLNELPPLQS SQESPSIIRE KVSKDGYNWR  120
KYGQKHVKGN EFIRSYYKCT YPNCQAKKQL QQSNNGNITD CVSIGQHNHP RPQLNSTVSV  180
ECVLPVVEQA ARKPLLANVK DKTSVEQGCT SLQIKPLQSF PTAKVSPVNE LKAAHLQLSK  240
AKNQIHDNED PESKRLKKDN SNVDATGITM STREPRVVVQ TSSEVDLVND GYRWRKYGQK  300
LVKGNANPRS YYRCSNPGCP VKKHVERASH DSKIVITTYE GQHDHELPPG RTVTHNAATN  360
THTTTMNGKA GTKSEDTAVN RGEQTGLGSA SKLTEQLNGK STTKSKVGDI VEFGVSSLSN  420
EGPKIKLSEQ HQKDNSGTKD DSVSNDVICH SSSGVPCRSN EQLKGEVKPL SEGTKDCLNK  480
VAIQDTPSTE SEFNKQPAAD AEPVQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-37276350276WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g00500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014504627.10.0WRKY transcription factor 1
RefseqXP_022637482.10.0WRKY transcription factor 1
TrEMBLA0A1S3UF120.0A0A1S3UF12_VIGRR; WRKY transcription factor 1
STRINGXP_007142503.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-80zinc-dependent activator protein-1