PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g22620.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 781aa    MW: 84688 Da    PI: 6.0755
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g22620.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14e-20109164156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k
  Vradi05g22620.1 109 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIK 164
                      688999**********************************************9987 PP
2START214.92.7e-673035201203
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++el+ +a+ ++p+W +      + +n+de++++f+++ +     ++ ea+r+++vv+m+++ lve+l+d++ qW++ +     +a+t
  Vradi05g22620.1 303 ELAVAAMEELIGMAQMGDPLWLTTLdgttTVLNEDEYIRSFPRGIGpkpagFKCEASRETAVVIMNHVSLVEILMDVN-QWSTVFSgivsRAMT 395
                      57899********************999999************999********************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      lev+s+g      galq+m+aelq++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skv+wve
  Vradi05g22620.1 396 LEVLSTGvagnynGALQVMTAELQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKVIWVE 485
                      *************************************************************99....5************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrq 203
                      hv++++r +h+l+++lv+sg+a+gak+w atl+rq
  Vradi05g22620.1 486 HVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQ 520
                      ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2388164IPR009057Homeodomain-like
SuperFamilySSF466893.38E-1999166IPR009057Homeodomain-like
PROSITE profilePS5007116.827106166IPR001356Homeobox domain
SMARTSM003893.0E-19107170IPR001356Homeobox domain
PfamPF000461.1E-17109164IPR001356Homeobox domain
CDDcd000863.40E-19109167No hitNo description
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
SuperFamilySSF559614.4E-33294522No hitNo description
PROSITE profilePS5084840.236294526IPR002913START domain
CDDcd088752.95E-127298521No hitNo description
SMARTSM002341.9E-58303523IPR002913START domain
PfamPF018522.3E-56304520IPR002913START domain
Gene3DG3DSA:3.30.530.203.0E-5397506IPR023393START-like domain
SuperFamilySSF559617.14E-20525772No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MPAGIMIPAR NMPSMIGRNG SVGGFGLSSG LSLGQIENHK GPESQRSIEM FQPNLMEAGQ  60
LLPLDMPQNT SESDVPRIHE DDFDSATKSG SENQEGASGE DQDPRPNKKK RYHRHTQHQI  120
QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQIKTQHERH ENTQLRTEND  180
KLRADNMRFR EALGNASCPN CGGPTAIGEM SFDEHHLRLE NARLREEIDR ISAIAAKYVG  240
KPVVSYPLLS PSSVPPRPLE LGIGGGFGGQ PAGIGGEMYG GAAGDLLRSI SGPTEADKPI  300
IIELAVAAME ELIGMAQMGD PLWLTTLDGT TTVLNEDEYI RSFPRGIGPK PAGFKCEASR  360
ETAVVIMNHV SLVEILMDVN QWSTVFSGIV SRAMTLEVLS TGVAGNYNGA LQVMTAELQV  420
PSPLVPTRES YFVRYCKQHG DGTWAVVDVS LDNLRPSPSA RCRRRPSGCL IQEMPNGYSK  480
VIWVEHVEVD DRGVHNLYKQ LVSSGHAFGA KRWIATLDRQ LITNQDGRKS MLKLAERMVI  540
SFCAGVSAST AHTWTTLSGT GADDVRVMTR KSVDDPGRPP GIVLSAATSF WLPVSPKRVF  600
EFLRDENSRS EAALLSAHRL LDIVVHWWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS  660
ANSSQSNMLI LQESCADSTG SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGTT  720
AHGGSIGDTG HGGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER IKTALSGEVA  780
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g22620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311700.0KT031170.1 Glycine max clone HN_CCL_122 homeodomain/HOMEOBOX transcription factor (Glyma13g38430.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501634.10.0homeobox-leucine zipper protein HDG2
RefseqXP_014501635.10.0homeobox-leucine zipper protein HDG2
RefseqXP_014501636.10.0homeobox-leucine zipper protein HDG2
RefseqXP_014501637.10.0homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A1S3U6I10.0A0A1S3U6I1_VIGRR; homeobox-leucine zipper protein HDG2
STRINGXP_007149968.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2