PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g22510.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 456aa    MW: 50933.2 Da    PI: 5.9511
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g22510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-173582148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv++vk++G g+W+++ +  g+ R++k+c++rw ++l
  Vradi05g22510.1 35 KGPWTPSEDAILVEYVKKHGEGNWNSVHKNSGLYRCGKSCRLRWANHL 82
                     79******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0273086IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-223188IPR009057Homeodomain-like
SMARTSM007172.9E-153484IPR001005SANT/Myb domain
PfamPF002492.0E-153582IPR001005SANT/Myb domain
SuperFamilySSF466897.19E-2035124IPR009057Homeodomain-like
CDDcd001672.79E-123782No hitNo description
Gene3DG3DSA:1.10.10.605.7E-6106124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MARTFSNNDS TNDETGDDSN ATTKEEGEVK GRVRKGPWTP SEDAILVEYV KKHGEGNWNS  60
VHKNSGLYRC GKSCRLRWAN HLRPNLKKVF LSEYMELESL FISFNNLPGR TDNEIKNFWN  120
TRMKRRQRAG LPIYPPELHA EPTAYNVQHR YLEHQPHSSF ALLLSSCYPK KLNDPSQTNG  180
FNANPLQNHP DSANCYINPT QKHFKFSNDN GASTNLAFPL SPLSQYGSSS STLLNHSFGD  240
HGIISGSPYE SFPLMSGSTP DISSNQTPTP ASSYASGVDG LMGSSTMANN NNNDYYEVAP  300
LSPPRNSGLL DALVMEAQGL SHNDKSKKEE DPTLAVKLSC KRKNMEYADE GRTEPMVSAM  360
KKNSRNSTST ENQRDDDNNF SQLSKGKKVM REDPMEEMNS MDDDLFSLLN QFPLETPMPE  420
WYRRGESQSL GLENQPNASP PDPADQEYAW TLGTC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-16351267107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g22510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499553.10.0transcription factor MYB101-like
TrEMBLA0A1S3U0K60.0A0A1S3U0K6_VIGRR; transcription factor MYB101-like
STRINGXP_007149977.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.15e-50myb domain protein 33