PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g21480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 463aa MW: 51072.6 Da PI: 4.2163 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 9.2e-16 | 32 | 83 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqk 46 +g+WT+ Ed +lvd+v+ +G g+W+++ +++ gRt++++k++w++ Vradi05g21480.1 32 KGPWTAAEDVILVDYVNTHGEGNWNAVQKMIDffcfqlPGRTDNEIKNYWNT 83 79************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.477 | 27 | 89 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 30 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.8E-14 | 30 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 31 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-14 | 32 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.51E-12 | 34 | 83 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MTHEIDDNVH GENQTGSRLN GGGIGGGTVL KKGPWTAAED VILVDYVNTH GEGNWNAVQK 60 MIDFFCFQLP GRTDNEIKNY WNTRMKRRQR AGLPLYPPEV VLQGFQDNKH DQGTAEISDG 120 DGGHQDFMEK SNYEMHDAIY DSLKENQGIL PFVPQLPDIS ANSILPNVLG SPSYCNFLPS 180 TLPNHDHLQE SSVSFVGSNE LNSNGFYPFD NFKDNTSDRI AESFGLHSPL DHGASSYGSI 240 CYSHSVSNDN YSTSKLASEA VKSELPSLQY PETEFGSWGT STPPPLNDST DVFIHSPQPP 300 YALDSGSSSS LSRFLNEFLY QQAKTLGYSN NNWPESSNSS IATPVDGAES SALNMYETEW 360 EDYADPVSPF GATSILNEHP VVGTNGKPWD GWEPFQTFSG NNVKLQSVDQ VSAPKIENQS 420 MSMLNLTWPD VLLASDWHEL YSENNSMNQA DMIDASDNFT RQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g21480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014498875.1 | 0.0 | transcription factor MYB33 isoform X1 | ||||
Refseq | XP_014498876.1 | 0.0 | transcription factor MYB33 isoform X1 | ||||
Refseq | XP_014498878.1 | 0.0 | transcription factor MYB33 isoform X1 | ||||
Refseq | XP_014498879.1 | 0.0 | transcription factor MYB33 isoform X1 | ||||
Refseq | XP_022637217.1 | 0.0 | transcription factor MYB33 isoform X1 | ||||
TrEMBL | A0A1S3TYM7 | 0.0 | A0A1S3TYM7_VIGRR; transcription factor MYB33 isoform X1 | ||||
STRING | XP_007148771.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 3e-54 | myb domain protein 33 |