PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g21400.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 300aa    MW: 32996.1 Da    PI: 6.9268
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g21400.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012112134123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C k Fs++  L  H++ H
  Vradi05g21400.1 112 FSCNFCQKEFSSSQALGGHQNAH 134
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.71E-7109139No hitNo description
Gene3DG3DSA:3.30.160.603.1E-5110138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.78112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASSHDLEDY SSEASSTSQD IHKSNAEEEK KHEVTTMKEK GIKFEESNKV SNSKTHMVLD  60
FVKFSNDQTL CGSKVELDFF NAKGSSSRAN HTQGRDEHNK EEKPSSETNK TFSCNFCQKE  120
FSSSQALGGH QNAHKQERAL AKRRQGIDGG AFGNPHFLYY PYNPTHSFYG SYNRALGVRM  180
ESMIHKPMYP SSSSLGLRFG QGLSRPDTMN SSCSSSAVGL QANAGIKIMG TDTTFRAQRD  240
HGNNTRHSIP FLAESSANVT AKANLTPLNH VEDNDDDHTK IEGTSNPSSS DEIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g21400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499527.10.0zinc finger protein 1-like
TrEMBLA0A1S3U0I60.0A0A1S3U0I6_VIGRR; zinc finger protein 1-like
STRINGXP_007148790.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-21C2H2 family protein