PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g21240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NF-YA | ||||||||
Protein Properties | Length: 279aa MW: 31447.3 Da PI: 9.7736 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 88 | 1.3e-27 | 133 | 213 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekk.......................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVN+KQy++Il+RR Rakle ++k ++ + +pylheSRh hA++R+Rg gGrF Vradi05g21240.1 133 EEPIYVNSKQYHAILRRRLYRAKLEVQNKpikdrkvlnmsmffclqfllnqtNNTVAMQPYLHESRHLHAVNRARGAGGRF 213 69**********************************************9987446789**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.0E-23 | 131 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 28.839 | 132 | 216 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.6E-24 | 134 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 137 | 157 | IPR018362 | CCAAT-binding factor, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MNCSSWGTSE SRSLSLKVDF LPQQCHRSKT LSFQFQEQDS SSIHSGQSST RLGSAKSGEM 60 SVQHSSTGST LQHRSFMQNQ DFTFPPPLLD HGQTLAHYAD PGYSNLMASS YGPQSMPVET 120 APMRIPLQLD VKEEPIYVNS KQYHAILRRR LYRAKLEVQN KPIKDRKVLN MSMFFCLQFL 180 LNQTNNTVAM QPYLHESRHL HAVNRARGAG GRFLNTKKLQ QSTRTRGNTA ESNMHQIENY 240 RDGDDTTYAS NTAARIMQNC ISDKGGGTTQ QQPLFVYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-13 | 133 | 218 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g21240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022637188.1 | 0.0 | nuclear transcription factor Y subunit A-3 isoform X3 | ||||
TrEMBL | A0A3Q0EZL0 | 0.0 | A0A3Q0EZL0_VIGRR; nuclear transcription factor Y subunit A-3 isoform X3 | ||||
STRING | XP_007150480.1 | 1e-135 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10120 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.2 | 2e-36 | nuclear factor Y, subunit A3 |