PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g21240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YA
Protein Properties Length: 279aa    MW: 31447.3 Da    PI: 9.7736
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g21240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA881.3e-27133213158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekk.......................ldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVN+KQy++Il+RR  Rakle ++k                        ++ + +pylheSRh hA++R+Rg gGrF
  Vradi05g21240.1 133 EEPIYVNSKQYHAILRRRLYRAKLEVQNKpikdrkvlnmsmffclqfllnqtNNTVAMQPYLHESRHLHAVNRARGAGGRF 213
                      69**********************************************9987446789**********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-23131216IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115228.839132216IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.6E-24134213IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860137157IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNCSSWGTSE SRSLSLKVDF LPQQCHRSKT LSFQFQEQDS SSIHSGQSST RLGSAKSGEM  60
SVQHSSTGST LQHRSFMQNQ DFTFPPPLLD HGQTLAHYAD PGYSNLMASS YGPQSMPVET  120
APMRIPLQLD VKEEPIYVNS KQYHAILRRR LYRAKLEVQN KPIKDRKVLN MSMFFCLQFL  180
LNQTNNTVAM QPYLHESRHL HAVNRARGAG GRFLNTKKLQ QSTRTRGNTA ESNMHQIENY  240
RDGDDTTYAS NTAARIMQNC ISDKGGGTTQ QQPLFVYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-13133218263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g21240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022637188.10.0nuclear transcription factor Y subunit A-3 isoform X3
TrEMBLA0A3Q0EZL00.0A0A3Q0EZL0_VIGRR; nuclear transcription factor Y subunit A-3 isoform X3
STRINGXP_007150480.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.22e-36nuclear factor Y, subunit A3