PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g21040.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 284aa    MW: 31946.5 Da    PI: 9.6543
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g21040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.98.9e-3514112199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      aCaaCk++rrkC ++C+lap fp+ ++k+f n+hklFG+ ++++++k l++ +r+ a++s+++e+++ra+dPv G++++il lq+ ++++++el
  Vradi05g21040.1  14 ACAACKYQRRKCGPNCILAPFFPHYRQKQFLNAHKLFGVGKITSMIKPLDPVNRNSAINSIIFESDMRAKDPVGGCFRTILYLQSVIASAESEL 107
                      7********************************************************************************************9 PP

           DUF260  95 allke 99 
                      + l +
  Vradi05g21040.1 108 QFLLQ 112
                      87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.25413114IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-3314109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEGGTSSSRS TIQACAACKY QRRKCGPNCI LAPFFPHYRQ KQFLNAHKLF GVGKITSMIK  60
PLDPVNRNSA INSIIFESDM RAKDPVGGCF RTILYLQSVI ASAESELQFL LQHLAFFRAQ  120
PLHSIATPQP PSSSHHPYHQ GMSLQESKQE LGKDPSQLQR QQQPKDPCFN YNALQEDMNV  180
SDIDNLILLN PFPLTALVWV HDQRGIGVVP NRSRFKSEGE WWVRSWPRSR RNTDRCYEKL  240
LLNWEEGEVV HDTRAAWWRG GVRAAAASVV FMGVKVKGVG VGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-231513012127LOB family transfactor Ramosa2.1
5ly0_B8e-231513012127LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g21040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499519.11e-138LOB domain-containing protein 22-like
TrEMBLA0A1S3U0I31e-136A0A1S3U0I3_VIGRR; LOB domain-containing protein 22-like
STRINGXP_007150515.14e-56(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-41LOB domain-containing protein 22