PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g20610.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

HD-ZIP

Protein Properties

Length: 796aa MW: 87555.2 Da PI: 6.4667

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g20610.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.4	1.5e-15	16	73	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R + ++ +e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Vradi05g20610.1 16 REKAQQVSVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73 777788899***********************************************97 PP
2	START	178.7	3.4e-56	159	367	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++l+v+ ++ g+++l Vradi05g20610.1 159 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVLPTAngGTIEL 251 7899****************************************************.8888888888************9999* PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++l+a+++l+p Rdf+ +Ry+ l++g++vi+++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+ Vradi05g20610.1 252 LYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPTmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRP 345 ****************************************9998899*************************************** PP HHHHHHHHHHHHHHHHTXXXXX CS START 184 lvksglaegaktwvatlqrqce 205 l++s+++ ++kt++ +l+++++ Vradi05g20610.1 346 LYESSTVLAQKTTMVALRQLRQ 367 *************9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.9E-9	12	78	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.896	14	74	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.01E-13	16	78	IPR009057	Homeodomain-like
Pfam	PF00046	4.2E-13	16	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.7E-15	20	73	IPR009057	Homeodomain-like
CDD	cd00086	7.41E-13	24	75	No hit	No description
CDD	cd14686	1.85E-6	67	106	No hit	No description
PROSITE profile	PS50848	25.241	149	364	IPR002913	START domain
CDD	cd08875	1.99E-80	153	368	No hit	No description
Gene3D	G3DSA:3.30.530.20	3.7E-23	156	364	IPR023393	START-like domain
SuperFamily	SSF55961	1.28E-37	158	347	No hit	No description
SMART	SM00234	1.3E-41	158	368	IPR002913	START domain
Pfam	PF01852	1.3E-53	159	367	IPR002913	START domain
Pfam	PF08670	1.6E-28	693	789	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence Send to blast
MKIGEAESFG FVLKLREKAQ QVSVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI 60 KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQHTQ 120 NTALPTKDTS CESAVTSGQR SLTAQHPPRD ASPAGLMSIA EETLAEFLSK ATGTAVEWVQ 180 MPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR DCRAVDVLNV 240 LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVICERSLK NTQNGPTMPP 300 VQHFVRAEML PSGYLIRPCE GGGSIIHIVD HMDLEPWSVP EVLRPLYESS TVLAQKTTMV 360 ALRQLRQISH EVSQSNVTGW GRRPAALRAL GQRLSRGFNE AINGFTDEGW SMIGNDGVDD 420 VTVLVNSSPD KLMGLNLSFA NGFPSISNAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD 480 NNMDAYSAAA IKVGPCGLPG SRVGNYGGQV ILPLAHTIEH EEFLEVIKLE GIAHSPEDAI 540 MPREVFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEASNPN 600 RTLDLASALD IGPTGNRASN DYSGNSGSMR SVMTIAFEFA FESHMQDHVA SMARQYVRSI 660 ISSVQRVALA LSPSHLSSQA GLRTPLGTPE AQTLARWICN SYRCYLGVEL LKSNNEGNES 720 LLKSLWHHSD AILCCTLKAL PVFTFANQAG LDMLETTLVA LQDITLEKIF DDHGRKILCS 780 EFPQIIQQVY DLNVH*

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence Send to blast

MKIGEAESFG FVLKLREKAQ QVSVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQHTQ  120
NTALPTKDTS CESAVTSGQR SLTAQHPPRD ASPAGLMSIA EETLAEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR DCRAVDVLNV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVICERSLK NTQNGPTMPP  300
VQHFVRAEML PSGYLIRPCE GGGSIIHIVD HMDLEPWSVP EVLRPLYESS TVLAQKTTMV  360
ALRQLRQISH EVSQSNVTGW GRRPAALRAL GQRLSRGFNE AINGFTDEGW SMIGNDGVDD  420
VTVLVNSSPD KLMGLNLSFA NGFPSISNAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNMDAYSAAA IKVGPCGLPG SRVGNYGGQV ILPLAHTIEH EEFLEVIKLE GIAHSPEDAI  540
MPREVFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSAKEASNPN  600
RTLDLASALD IGPTGNRASN DYSGNSGSMR SVMTIAFEFA FESHMQDHVA SMARQYVRSI  660
ISSVQRVALA LSPSHLSSQA GLRTPLGTPE AQTLARWICN SYRCYLGVEL LKSNNEGNES  720
LLKSLWHHSD AILCCTLKAL PVFTFANQAG LDMLETTLVA LQDITLEKIF DDHGRKILCS  780
EFPQIIQQVY DLNVH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g20610.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014501306.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1S3U5M9	0.0	A0A1S3U5M9_VIGRR; homeobox-leucine zipper protein ATHB-15
STRING	XP_007150614.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1946	33	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]