PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g20420.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 802aa    MW: 89442.5 Da    PI: 6.5972
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g20420.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.3e-21148203156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Vradi05g20420.1 148 RKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 203
                      7999************************************************9877 PP
2START225.21.9e-703195404206
                      HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
            START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                      ++a++el+k+a+ +ep+W +s     e++n+de++++f+ +++      +s+ea+r++gvv+ +l++lv+++ld++ qW+e+++    ka+t++
  Vradi05g20420.1 319 NQALEELIKMATMGEPLWLRSFetgrEILNYDEYVKEFAVENSssgkpkRSIEASRDTGVVFVDLPRLVQSFLDVN-QWKEMFPclisKAATVD 411
                      67999****************99***************9888899*******************************.***************** PP

                      EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
            START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                      vi++g      ga+qlm+ae+q+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh 
  Vradi05g20420.1 412 VICNGegpnrnGAVQLMFAEMQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHL 504
                      ***********************************************************98.9******************************* PP

                      E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++ +h+l+r +v+sgla+ga++w  tlq qce+
  Vradi05g20420.1 505 ECQKSAVHSLYRTIVNSGLAFGARHWITTLQLQCER 540
                      **********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-23135199IPR009057Homeodomain-like
SuperFamilySSF466894.18E-20140206IPR009057Homeodomain-like
PROSITE profilePS5007118.091145205IPR001356Homeobox domain
SMARTSM003898.6E-19147209IPR001356Homeobox domain
PfamPF000461.1E-18148203IPR001356Homeobox domain
CDDcd000866.28E-17152203No hitNo description
PROSITE patternPS000270180203IPR017970Homeobox, conserved site
PROSITE profilePS5084838.57307543IPR002913START domain
SuperFamilySSF559617.69E-32310540No hitNo description
CDDcd088753.31E-110312539No hitNo description
SMARTSM002341.0E-70316540IPR002913START domain
PfamPF018527.1E-56319540IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-4366535IPR023393START-like domain
SuperFamilySSF559611.18E-14562762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
SSFLCFYILK SILRYVSFSL SLFFPTQHKL HHFNLFFHSS SSPMGADMSN NPPPTSHAKD  60
FFASPALSLS LAGIFRHAGV AAEAEAATSN MEVEEWEEGS GGGERLEEIS SENSGPTRSR  120
SEDDFEGEGE HEDADADADG DRKKKKKRKK YHRHTADQIR EMEALFKESP HPDEKQRQQL  180
SKQLGLAPRQ VKFWFQNRRT QIKAIQERHE NSLLKSEIEK LKEKNKTLRE TINKACCPTC  240
GVATTSRDGA MPTEEQQLRI ENAKLKAEVE KLRAALGKYA PGSTSPSCSS GHDQENRSSL  300
DFYTGIFGID NSRIMDIVNQ ALEELIKMAT MGEPLWLRSF ETGREILNYD EYVKEFAVEN  360
SSSGKPKRSI EASRDTGVVF VDLPRLVQSF LDVNQWKEMF PCLISKAATV DVICNGEGPN  420
RNGAVQLMFA EMQMLTPMVP TREVYFVRFC KQLSAEQWAI VDVSIDKVED NIDASLVKCR  480
KRPSGCIIED KSNGHCKVIW VEHLECQKSA VHSLYRTIVN SGLAFGARHW ITTLQLQCER  540
LVFFMATNVP MKDSTGVATL AGRKSILKLA QRMTWSFCHA IGASSFHTWT KVTSKNGEDI  600
RISSRKNLND PGEPLGLILC AVCSVWLPVS QNVLFDFLRD ETRRSEWDIM SSGGTVQSIA  660
NLSKGQDRGN VVTIQTIKLK ENSVWILQDS CTNPYESMVV YASVDISGIQ SVMTGCDSSN  720
LAILPSGFSI IPDGLESRPL VITSRQEEKY TEGGSLFTMA FQILTNASPT AKLTVESVDS  780
VNTLVSCTLR NIRTCLQCEE G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146DRKKKKK
2141149RKKKKKRKK
3143148KKKKRK
4143149KKKKRKK
5145149KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g20420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498860.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1S3TYL60.0A0A1S3TYL6_VIGRR; homeobox-leucine zipper protein GLABRA 2
STRINGXP_007150635.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]