PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g19320.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 268aa    MW: 30382.6 Da    PI: 6.7726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g19320.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.46.4e-284412154128
              NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +eke yfF++r +ky+++ r+nr+t sg+Wkatg dk+v+s+   ++  +glkktLv+y+g+a kg+ktdW+mhe+rl
  Vradi05g19320.1  44 GEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQggeGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 121
                      67899************************************96655555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.1641151IPR003441NAC domain
SuperFamilySSF1019413.92E-3823151IPR003441NAC domain
PfamPF023651.4E-1824121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGVNENFNKD DHHECVDDDE IPLPGFRFHP TDEELVTESN GSGGEKEGYF FCRRGRKYRN  60
SIRPNRVTGS GFWKATGIDK PVYSQGGEGN DCIGLKKTLV YYRGSAGKGT KTDWMMHEFR  120
LPSNTDLPNS TNYVDVPQEA EIWTLCRIFK RNVSQRKQVP ELKQVSAKRH AFYEKSSRAS  180
NMEFDSGNQE SYINFGGHYQ KEQKAVINYT NCDKRNQLCC TVAQQQPQLT APSSNLWSNP  240
PGNDFFTFDN WDELGSVVKF AVDSPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-322415719171NO APICAL MERISTEM PROTEIN
1ut4_B6e-322415719171NO APICAL MERISTEM PROTEIN
1ut7_A6e-322415719171NO APICAL MERISTEM PROTEIN
1ut7_B6e-322415719171NO APICAL MERISTEM PROTEIN
3swm_A7e-322415722174NAC domain-containing protein 19
3swm_B7e-322415722174NAC domain-containing protein 19
3swm_C7e-322415722174NAC domain-containing protein 19
3swm_D7e-322415722174NAC domain-containing protein 19
3swp_A7e-322415722174NAC domain-containing protein 19
3swp_B7e-322415722174NAC domain-containing protein 19
3swp_C7e-322415722174NAC domain-containing protein 19
3swp_D7e-322415722174NAC domain-containing protein 19
4dul_A6e-322415719171NAC domain-containing protein 19
4dul_B6e-322415719171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g19320.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-139AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500826.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK554e-59NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S3U4950.0A0A1S3U495_VIGRR; transcription factor JUNGBRUNNEN 1
STRINGXP_007149303.11e-175(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.12e-66NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]