PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g18650.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 341aa MW: 39176.2 Da PI: 4.7211

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g18650.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.4	1.2e-52	4	126	6	128
NAM 6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 FhPtdeelv +yL++k++g+++el ++i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat++gyWkatgkd++v+s ++ Vradi05g18650.1 4 MFHPTDEELVAYYLERKITGRSIEL-DIIAEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHS-QK 95 6**********************.99**********96435566888**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kktLv+y+grap+g +t+Wvmheyrl Vradi05g18650.1 96 KPVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 126 9**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.444	1	150	IPR003441	NAC domain
Pfam	PF02365	6.7E-26	3	126	IPR003441	NAC domain
SuperFamily	SSF101941	8.89E-59	4	150	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MYVMFHPTDE ELVAYYLERK ITGRSIELDI IAEVDLYKCE PWDLPDKSFL PSKDMEWYFY 60 SPRDRKYPNG SRTNRATQAG YWKATGKDRP VHSQKKPVGM KKTLVYYRGR APHGIRTNWV 120 MHEYRLIESL PGAALSSLKD SYSLCRIFKK MIQMPAKPSK EEEQQAEDAK KESMWISEEQ 180 MLGEDSSGTE FSREMETVEE KILNHEYPKF PCDASSSDLT QGTCTPTDTG IAEDFQPHFA 240 CDEANSATNS YTMGMGYPSN LFQDVEIPSF AAMHYQFPYT PLVLEDFPQI TLPETKSTKP 300 EMSDSCMLYD RHRDCMNGTL EEIISLCCTQ DNNVPFPMLE *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	5	150	23	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	5	150	23	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	5	150	23	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	5	150	23	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-52	5	150	26	168	NAC domain-containing protein 19
3swm_B	2e-52	5	150	26	168	NAC domain-containing protein 19
3swm_C	2e-52	5	150	26	168	NAC domain-containing protein 19
3swm_D	2e-52	5	150	26	168	NAC domain-containing protein 19
3swp_A	2e-52	5	150	26	168	NAC domain-containing protein 19
3swp_B	2e-52	5	150	26	168	NAC domain-containing protein 19
3swp_C	2e-52	5	150	26	168	NAC domain-containing protein 19
3swp_D	2e-52	5	150	26	168	NAC domain-containing protein 19
4dul_A	1e-52	5	150	23	165	NAC domain-containing protein 19
4dul_B	1e-52	5	150	23	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g18650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014500624.1	0.0	NAC domain-containing protein 71 isoform X2
TrEMBL	A0A1S3U3Q2	0.0	A0A1S3U3Q2_VIGRR; NAC domain-containing protein 71 isoform X2
STRING	XP_007149170.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-91	NAC domain containing protein 20