PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi05g18500.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 281aa MW: 31910.8 Da PI: 7.8939

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi05g18500.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.4	4.2e-34	20	94	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++++++ +g++ktLvfy+grap+g+ktdW+mheyrl Vradi05g18500.1 20 PQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 94 457**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.05	1	115	IPR003441	NAC domain
SuperFamily	SSF101941	6.54E-38	19	115	IPR003441	NAC domain
Pfam	PF02365	3.8E-16	20	94	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MMPSNGQLTV PPGFRIGSGP QNEWYFFSHK DKKYPTGTRT NRATTAGFWK ATGRDKAIYH 60 TNSKRIGMRK TLVFYTGRAP HGQKTDWIMH EYRLDEDDAD VQQEDGWVVC RVFKKKNQNR 120 GFQQEIEEEE NLTHMRTSGP CHVLEPKHHM QGGLYDYNFD GTMQLPQLFS PESAVAPNNS 180 CLATSMNAMD ILECSQNLLR LTTNGCGLNL MQQQGERFSG DWSFLDKLLA SHHAMDHQHH 240 PQSKCNPPTH QAATSVATSA QKFPFHYLGC DTHDIMKFSK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-32	21	117	70	167	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-32	21	117	70	167	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-32	21	117	70	167	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-32	21	117	70	167	NO APICAL MERISTEM PROTEIN
4dul_A	7e-32	21	117	70	167	NAC domain-containing protein 19
4dul_B	7e-32	21	117	70	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi05g18500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022637031.1	0.0	NAC domain-containing protein 76 isoform X1
Swissprot	Q9MA17	3e-73	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A3Q0F0P6	0.0	A0A3Q0F0P6_VIGRR; NAC domain-containing protein 76 isoform X1
STRING	XP_007149140.1	1e-180	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7204	34	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	1e-65	NAC family protein

Publications ? help Back to Top
Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]