PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g18150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 245aa MW: 27346.5 Da PI: 9.8077 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.9e-18 | 65 | 119 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Vradi05g18150.1 65 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 119 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 129.3 | 1.6e-41 | 65 | 155 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Vradi05g18150.1 65 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 155 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-18 | 48 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.94E-19 | 51 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 63 | 125 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.8E-16 | 65 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.15E-15 | 65 | 122 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.6E-25 | 121 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.4E-11 | 121 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MELGLSLGDS SRPLLSFMEK PREASNQLGG GSFYKRNYEG EAYDQRASSR ASDEDDNNGS 60 GGNGRKKLRL SKEQSAFLEE SFKEHNTLNP KQKLALAKQL NLRPRQVEVW FQNRRARTKL 120 KQTEVDCEYL KRCCETLTEE NRRLHKELQE LRALKSSNPF YMQLPATTLT MCPSCERVAT 180 NSTSTSSSQS APNATINANS GAMTIVKSSA TNNDSPSKPI GFPFGKPRFH PFVHTTHQHQ 240 SPSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g18150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014500099.1 | 1e-158 | homeobox-leucine zipper protein HOX11 | ||||
Swissprot | A2YW03 | 3e-79 | HOX27_ORYSI; Homeobox-leucine zipper protein HOX27 | ||||
Swissprot | P46665 | 1e-79 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
Swissprot | Q6YPD0 | 3e-79 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A1S3U282 | 1e-157 | A0A1S3U282_VIGRR; homeobox-leucine zipper protein HOX11 | ||||
STRING | XP_007149086.1 | 1e-140 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2335 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-60 | homeobox from Arabidopsis thaliana |