PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g15890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | Nin-like | ||||||||
Protein Properties | Length: 500aa MW: 56034.4 Da PI: 7.6529 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.2 | 7.8e-29 | 295 | 346 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Vradi05g15890.1 295 AEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 346 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.291 | 285 | 366 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.1E-24 | 299 | 346 | IPR003035 | RWP-RK domain |
SMART | SM00666 | 1.1E-21 | 400 | 483 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 22.891 | 400 | 483 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.26E-39 | 403 | 482 | No hit | No description |
Pfam | PF00564 | 2.4E-16 | 403 | 482 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 5.3E-21 | 403 | 481 | No hit | No description |
SuperFamily | SSF54277 | 2.07E-21 | 403 | 485 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MVIQVWVPAR RGCEVGIHHH QDFPYTLDYI SNGDATRSFQ FHEEWLSDHW PPNIRFLRTH 60 DYPRLHHYDL RPGSLAIPVF QRGTGICLAS FVADVDVLGF LEACSEYHLL GGQGVVGTAF 120 TTSKPCFAND ITAFTKAEYP LAHHANMFGL HAAVAIPLRS VSSDFVLEFF LPKDCHDTQD 180 QKQILNSLSM LVQQACRSLH VVLDKEEEEE LVSHHHHHHS KEMESSSWIA HMMEAQQKGK 240 GVSVSLEYLQ EPKQEFKVTT NCNEQVFSDL EGTGGAGVGG RRGGRKSGDK RRTKAEKTIS 300 LPVLRQYFAG SLKDAAKSIG VCPTTLKRIC RQHGITRWPS RKIKKVGHSL RKLQLVIDSV 360 QGAEGAIQIG SFYTSFPELS ANGVSESPKI NSDNSKFYSE NGVKATFGDE KIRFSLQPNC 420 GFRDLQMEIA RRFNLKEMSK IQVKYLDDAQ EWVLLTCDAD LEECKDINRS SQSRTVRLFL 480 FHASPLNHST NAFGSTSPT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g15890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017420520.1 | 0.0 | PREDICTED: protein NLP1 | ||||
Swissprot | Q7X9B9 | 1e-100 | NLP2_ARATH; Protein NLP2 | ||||
Swissprot | Q9SFW8 | 1e-100 | NLP5_ARATH; Protein NLP5 | ||||
TrEMBL | A0A0L9UIJ9 | 0.0 | A0A0L9UIJ9_PHAAN; Uncharacterized protein | ||||
STRING | XP_007137300.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1237 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 7e-87 | Nin-like family protein |