PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g13270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 182aa MW: 19949.3 Da PI: 6.3549 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 3 | 46 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT eE ++ da + +G++ +W +a+ +g g++ +++k ++q Vradi05g13270.1 3 WTREENRRFEDALAVHGPDdpnRWQHVANAVG-GKSVEEVKMHYQ 46 *****************99*************.***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.874 | 1 | 53 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 3.14E-12 | 3 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-6 | 3 | 51 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-5 | 3 | 49 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-8 | 3 | 46 | No hit | No description |
Pfam | PF00249 | 1.9E-8 | 3 | 46 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MGWTREENRR FEDALAVHGP DDPNRWQHVA NAVGGKSVEE VKMHYQILQE DVIRIEHDQI 60 PLPRYRGAGI NGRQIDNEQR DISPLLKSPA NEESDSPMKH FGVGKGIRGN GEDIISFGVF 120 GGVGSAIPCG FGPGRLEGSL ESGRALPRRI GPGPESYRWG RGPECYGWGL GPRCCGEQYI 180 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-19 | 3 | 82 | 11 | 90 | RADIALIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g13270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 1e-124 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15365 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-25 | RAD-like 6 |