PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g13240.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 98aa    MW: 11134.5 Da    PI: 8.9155
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g13240.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.3e-10652347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+   +++ +a + +  +   +W+  ar +g g+t +++k ++qk+
  Vradi05g13240.1  6 GWTPKQNKRFENALAIFDEDtpdRWHNLARAVG-GKTVEDVKRHYQKL 52
                     6******************9*************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.6E-7355IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-12561IPR009057Homeodomain-like
PfamPF002497.2E-7652IPR001005SANT/Myb domain
CDDcd001678.16E-7753No hitNo description
Gene3DG3DSA:1.10.10.607.4E-4754IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MASSQGWTPK QNKRFENALA IFDEDTPDRW HNLARAVGGK TVEDVKRHYQ KLVEDVKQIE  60
EGHVPLPNYR TVSTMASSIR GYGYINEENR MKGLSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-29172176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g13240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-132AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500760.19e-69protein RADIALIS-like 3
RefseqXP_017437359.19e-69PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1739e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0S3RBI22e-67A0A0S3RBI2_PHAAN; Uncharacterized protein
TrEMBLA0A1S3U4052e-67A0A1S3U405_VIGRR; protein RADIALIS-like 3
STRINGXP_007136596.19e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-35RAD-like 6