PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g13120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 324aa    MW: 35498.6 Da    PI: 10.3082
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g13120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028107129123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC+ C+k +  +s+ k H +t+
  Vradi05g13120.1 107 WKCERCSKKYAVQSDWKAHTKTC 129
                      58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-495128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAEPQNPSPF THSSATEIAL QPQPLPLPKR KRNLPGMPGF QRDQNLQLHR RGHNLPWKLR  60
QRGSKEPRKK AYVCPEPSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCE RCSKKYAVQS  120
DWKAHTKTCG SREYRCDCGT LFSRNSRKAK EAVTDVSKSN LLRDKQHPFQ FQFLHYCFCK  180
CVGTVHNNNS FTFSITVAIN FLILQPPQMG ASTASLLRGL GLATTSPSSL AKDEGFNISA  240
TTTAQWNGQI KQENQPMVDN LGLGLPCGSD VMMGPSTPFV GQPMTRDLLG LSIGGGASRG  300
GLSALVTSFG GNFDSPGDGG VHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-21103144344Zinc finger protein JACKDAW
5b3h_F1e-21103144344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15769KLRQRGSKEPRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g13120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-165AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498477.14e-98protein indeterminate-domain 2
TrEMBLA0A1S3TXI11e-96A0A1S3TXI1_VIGRR; protein indeterminate-domain 2
STRINGGLYMA06G03630.24e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-67C2H2 family protein