PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g12600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17517.5 Da PI: 9.4593 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 9e-18 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Vradi05g12600.1 32 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFYLRG 81 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.6E-37 | 32 | 95 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-21 | 32 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.062 | 32 | 89 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-11 | 33 | 81 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-12 | 33 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.35E-27 | 33 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-30 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-12 | 71 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MEEGLGDCCS SNSTATTRKT QKRKHQQHQD KPYRGIRMRK WGKWVAEIRE PNKRSRIWLG 60 SYATPVAAAR AYDTAVFYLR GPSARLNFPE LLFQDDDVST QEGNMSADCI RKKATQVGAR 120 VDALQTALQS SSSHSANSSH VSSDKPDLNE YPKPED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 29 | 89 | 2 | 63 | ATERF1 |
3gcc_A | 2e-15 | 29 | 89 | 2 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00595 | DAP | Transfer from AT5G67190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g12600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499763.1 | 1e-115 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 2e-50 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q9FH94 | 5e-50 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | A0A1S3U158 | 1e-114 | A0A1S3U158_VIGRR; ethylene-responsive transcription factor RAP2-1-like | ||||
STRING | GLYMA04G04355.2 | 4e-84 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 5e-51 | DREB and EAR motif protein 2 |
Publications ? help Back to Top | |||
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