PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g12030.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 630aa    MW: 69335 Da    PI: 6.8201
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g12030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-12274330155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Vradi05g12030.1 274 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 330
                      78*******************77776664346655.77******************98 PP
2AP246.87.1e-15373424155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Vradi05g12030.1 373 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 424
                      57****************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.18E-18274337No hitNo description
PfamPF008471.1E-9274330IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-14274340IPR016177DNA-binding domain
PROSITE profilePS5103216.937275338IPR001471AP2/ERF domain
SMARTSM003803.9E-21275344IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-12275338IPR001471AP2/ERF domain
PRINTSPR003671.4E-6276287IPR001471AP2/ERF domain
CDDcd000183.68E-26373434No hitNo description
PfamPF008473.0E-10373424IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-18373434IPR016177DNA-binding domain
PROSITE profilePS5103219.137374432IPR001471AP2/ERF domain
SMARTSM003803.3E-34374438IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-19374432IPR001471AP2/ERF domain
PRINTSPR003671.4E-6414434IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MKGMDESNTD DGSNHNWLGF SLSPHMNMEV TSAATIPNPT VPTTFYMSSP HISSSGICYG  60
VGGNVMAPNS TPKLEDFLGG ATMGTHEYGS HERGANAMAL SLDSIYYSTQ NAQAQPNRDT  120
LSESFRQQGH MNVQTHPYYS GLGCHGMYQA QMEDEATKEA HASVCSSLMP QMTEDSLKNW  180
MASREYSTHQ QVLEQEMNCG MGNEGSGMSL GTVGCGELQS LSLSMSPGSQ SSCVTAPSGP  240
DSVAVDAKKR GHVKLGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE  300
GQTRKGRQGG YDMEEKAARA YDLAALKYWG PSTHINFSIE NYHVELEEMK SMSRQEYVAH  360
LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDVAAI  420
KFRGANAVTN FDISRYDVER IMASINLLAG ELARRNKDND PRNEGRECSM KNNNKGVMTS  480
EKQEEIVEGR NSNENDPEWK MVLFNQASQQ QQSNGSEEKI MNCGNYRNSA FSGALQDLIG  540
IDSVEECSKI GTHFSNASSL VTSLSSSREA SPEKTGPSLL FPKPSMETKI VNPISTSVTS  600
WLPSPTVEIR PPPAISLSHL PVFAAWTDT*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g12030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502280.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-147CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1S3U8D10.0A0A1S3U8D1_VIGRR; AP2-like ethylene-responsive transcription factor ANT
STRINGXP_007136788.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-129AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]