PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g11250.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 183aa    MW: 20985.5 Da    PI: 5.603
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g11250.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-162169355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykG r +k +g+Wv+eIr p++   rkr++lg+++++e+Aa+a +aa  +l+g
  Vradi05g11250.1 21 YKGARKRK-WGKWVSEIRLPNS---RKRIWLGSYDSPEKAARAFDAALFCLRG 69
                     99999998.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.40E-291979No hitNo description
PROSITE profilePS5103221.6142077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-272078IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-202077IPR016177DNA-binding domain
SMARTSM003806.1E-312083IPR001471AP2/ERF domain
PfamPF008471.3E-92169IPR001471AP2/ERF domain
PRINTSPR003671.4E-82132IPR001471AP2/ERF domain
PRINTSPR003671.4E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNMEKHAMSG GGDCKSGEKL YKGARKRKWG KWVSEIRLPN SRKRIWLGSY DSPEKAARAF  60
DAALFCLRGR RANFNFPNTP CNMDTNVPLP VPALQSLTPH EIQEVDHGDM DWTFLKEFDY  120
SNEVFPVGSD YDLYSELHKM HSTSGELLYS TPPPPPFEGY QELTEAEEDP FSHQSFLWNW  180
NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-14987381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g11250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-156AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499348.26e-72ethylene-responsive transcription factor ERF016-like
TrEMBLA0A1S3U0061e-70A0A1S3U006_VIGRR; ethylene-responsive transcription factor ERF016-like
STRINGAES734985e-60(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.18e-37ERF family protein