PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g11170.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CO-like
Protein Properties Length: 292aa    MW: 31862.8 Da    PI: 7.9991
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g11170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.47.1e-09446440
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     + C+ +++  ++l+C+ +  +lC  C ++ H        H +v
  Vradi05g11170.1  4 KLCDSCKSATATLYCRPDAAFLCGACDSKVHAAnklasrHPRV 46
                     68*****************************656666677665 PP
2zf-B_box22.91.8e-074790441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                       C+ +e+ +++  C+ +   lC  C   +H+       H++ p
  Vradi05g11170.1 47 ALCEVCEQAPAHVTCKADAAVLCLACDRDIHSAnplasrHERLP 90
                     68*****************************6688888898876 PP
3CCT70.93.1e-24234277144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  Vradi05g11170.1 234 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRS 277
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.665148IPR000315B-box-type zinc finger
PfamPF006433.4E-7446IPR000315B-box-type zinc finger
CDDcd000213.28E-8548No hitNo description
PROSITE profilePS5011910.6084491IPR000315B-box-type zinc finger
PfamPF006435.4E-64791IPR000315B-box-type zinc finger
CDDcd000213.52E-84891No hitNo description
SMARTSM003361.1E-84991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787234276IPR010402CCT domain
PfamPF062034.0E-18234276IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MASKLCDSCK SATATLYCRP DAAFLCGACD SKVHAANKLA SRHPRVALCE VCEQAPAHVT  60
CKADAAVLCL ACDRDIHSAN PLASRHERLP VTPFYESVHS VKASSPINFL DDHRFFSDAD  120
ADVSTEEAEA ASWLLPTPKT DLNSSQYLFS ESEPVPYIDL DYAVADPKAD PKGSATADGV  180
VPVQSNYEPF AYGYKYNSTT LSQSQSQMSQ SISNCSYSKV AAVTVTAQFS AADREARVLR  240
YREKRKNRKF EKTIRYASRK AYAETRPRIK GRFAKRSDAD PLAGYGVVPS C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g11170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014502470.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-106COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A1S3U8X00.0A0A1S3U8X0_VIGRR; zinc finger protein CONSTANS-LIKE 4
STRINGXP_007136923.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-104CONSTANS-like 4