PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g10590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | CAMTA | ||||||||
Protein Properties | Length: 225aa MW: 25865.1 Da PI: 8.5767 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 185.7 | 4.9e-58 | 13 | 129 | 2 | 117 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 ++e ++rwlk+ e++ iL+n+ek++lt+e++++p+sgsl+L+n++++r+frkDG++w+kk+dg+tv E+he+LKvg+ve+l+cyYah+e++p+f Vradi05g10590.1 13 HQEaQARWLKPAEVMYILQNHEKFQLTQEPPQQPTSGSLFLFNKRVLRFFRKDGHNWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEQTPSF 106 677799**************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylev 117 qrr+yw+L+ e+e+ivlvhy+++ Vradi05g10590.1 107 QRRSYWMLDPEYEHIVLVHYRNT 129 *********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.142 | 9 | 135 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 2.0E-78 | 12 | 130 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.1E-50 | 15 | 128 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.1180 | 8.4E-5 | 158 | 191 | IPR013780 | Glycosyl hydrolase, all-beta |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MTPGYEYDIN DLHQEAQARW LKPAEVMYIL QNHEKFQLTQ EPPQQPTSGS LFLFNKRVLR 60 FFRKDGHNWR KKRDGRTVGE AHERLKVGNV EALNCYYAHG EQTPSFQRRS YWMLDPEYEH 120 IVLVHYRNTS YTKAGKVVAK SLACLTDGAT KTEFNFSNGK NLVVVVYLEW HREDIIRIPV 180 VNENVGVQDS NVPPIGFSTY YVSYAKGEAT ILDGDPAYTS KNGR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g10590.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-63 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014501048.1 | 2e-89 | calmodulin-binding transcription activator 4 isoform X2 | ||||
Refseq | XP_022636593.1 | 2e-89 | calmodulin-binding transcription activator 4 isoform X1 | ||||
Swissprot | Q9FYG2 | 4e-65 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A0L9TLU4 | 8e-95 | A0A0L9TLU4_PHAAN; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1S3U4T0 | 5e-88 | A0A1S3U4T0_VIGRR; calmodulin-binding transcription activator 4 isoform X2 | ||||
TrEMBL | A0A3Q0EXX0 | 5e-88 | A0A3Q0EXX0_VIGRR; calmodulin-binding transcription activator 4 isoform X1 | ||||
STRING | XP_007158673.1 | 4e-86 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14241 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67310.1 | 2e-67 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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