PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g10500.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C2H2
Protein Properties Length: 253aa    MW: 27698.2 Da    PI: 7.606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g10500.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000285107123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C + F ++  L  H++ H
  Vradi05g10500.1  85 FSCNYCQRKFYSSQALGGHQNAH 107
                      89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-682113No hitNo description
PROSITE profilePS5015711.42785112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
METLSYQAPF CDSLSAGVTP SSHSTPLQNP QEKKLEEEEE KKGDTLLDLN VPGDDSATGC  60
SPVLNLITCL ETDLSSEDPH EPRVFSCNYC QRKFYSSQAL GGHQNAHKRE RSIAKKSHRS  120
VSSMVAPATD FGIPFPHYPT VASLPLHGAC GNKPLGIQTH CMIHRPPPLL SPHFSFNGFS  180
NTFGHHHGWS RPLITQQPGI GKLTMESCRK TSRDNVGRLQ LKSAGNEEIS EYLVSGNTGQ  240
EKKKHLDLSL KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g10500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500531.10.0zinc finger protein 1-like
TrEMBLA0A1S3U3E90.0A0A1S3U3E9_VIGRR; zinc finger protein 1-like
STRINGXP_007136968.11e-128(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-40C2H2 family protein