PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g10390.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-other
Protein Properties Length: 306aa    MW: 34297.4 Da    PI: 6.1297
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g10390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.45.1e-082422752154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp++e++++L +++gL+ +q+ +WF N+R +
  Vradi05g10390.1 242 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 275
                      469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-202973IPR005540KNOX1
PfamPF037903.0E-183172IPR005540KNOX1
SMARTSM012562.2E-2281155IPR005541KNOX2
PfamPF037912.2E-12116154IPR005541KNOX2
PROSITE profilePS5007111.726216279IPR001356Homeobox domain
SMARTSM003891.2E-10218283IPR001356Homeobox domain
SuperFamilySSF466895.56E-16219282IPR009057Homeodomain-like
CDDcd000865.29E-12220280No hitNo description
Gene3DG3DSA:1.10.10.602.6E-25223280IPR009057Homeodomain-like
PfamPF059207.5E-18236275IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MTGAGSGDLK SEAAAVEGGG DGLMNWQNAR FKAEILSHPL YEQLLSAHVA CLRIATPVDQ  60
LPRIDAQLAQ SQNVLAKYSA FGQAIGDDKE LDHFIYYGRF TINDFYIFFK FLLQSSYVLL  120
LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSLTGVSPGE GTGATMSDDE DEQVDSDANL  180
FDGGLDGPDS MGFGPLIPTE NERSLMERVR HELKHELKQR RAGKLPGDTT SVLKAWWQSH  240
SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSTSTVLKSK RKRSNAGDNS  300
TDHHM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272292RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g10390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-149AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501531.10.0homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-162KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1S3U6970.0A0A1S3U697_VIGRR; homeobox protein knotted-1-like 3 isoform X1
STRINGXP_007136985.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-165KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]