PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g09280.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 351aa    MW: 38434.1 Da    PI: 6.3968
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g09280.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1431e-13178232357
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                      elkr rrk +NR +ArrsR+RK+a+++ Le  v++L+ eN +L k+ +  +++  
  Vradi05g09280.1 178 ELKRLRRKVSNRNSARRSRRRKQAQLADLELQVEKLKVENATLYKQFNDASQHFR 232
                      79******************************************99887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-10176240IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.806178241IPR004827Basic-leucine zipper domain
PfamPF001701.1E-11178228IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-9180229No hitNo description
Gene3DG3DSA:1.20.5.1707.6E-7180215No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
CDDcd147028.24E-7197232No hitNo description
Gene3DG3DSA:1.20.5.101.8E-4216250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MRIEFLFIPL KLLLSFPFPS QFSLLLLTLS LSGHVLAASQ ESLTPSSVFS GHGCFERMTT  60
TESDLDNDFS NLDELRYLNL AGTDVFAAFQ NLLPDAMTSF STCGLTDPFS SQNLTPKHST  120
ITATIDSRSS ICGTANVGSP VSANKPEGWK THTKGATSGS SEPSDEDGPC EQSTNAVELK  180
RLRRKVSNRN SARRSRRRKQ AQLADLELQV EKLKVENATL YKQFNDASQH FREADTNNRV  240
LKSDVEALRA KVKLAEDMVT RGSFTTLNNQ LLPTQCQVNT PPPLNTTNLR RMAHVSPTIT  300
VHGNDGSYND ATVCVQNSDL GNLDMNFNDM NNVNGVMSDG MSCGSIWPPF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182198RRKVSNRNSARRSRRRK
2192199RRSRRRKQ
3194199SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g09280.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966690.0BT096669.1 Soybean clone JCVI-FLGm-21C7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499771.20.0basic leucine zipper 9
SwissprotQ9FUD33e-53BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A1S3U1810.0A0A1S3U181_VIGRR; basic leucine zipper 9
STRINGXP_007137151.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41953458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-43basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]