PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g08950.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family CPP
Protein Properties Length: 495aa    MW: 54706.1 Da    PI: 8.3536
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g08950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.22.4e-16193232140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Vradi05g08950.1 193 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 232
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163425.592115233IPR005172CRC domain
SMARTSM011148.4E-20193234IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.1E-13196231IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MEPRETMSDS IPQKLARELD FTVVCRDNPH LKLPPPSPPP PHSLLPLSSH LPLQLNLQTP  60
GQRPWLCSEP QEQQPWLHSP GSKLVLPVRQ FPQPVQNLPV KVLPVVKSES PISQPRINVE  120
LKDTTPKKQK QSGIYCDGCN CVNCHNNVDN EAARQEAVGI TLERNPNAFR PKIASSPQEQ  180
RNFKESEAQV IGKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCMDCKN FEGSTERRAI  240
FHREYNLVHI EQGINVAVTE VLGSSGYRNP ITPKRRKIQE TFSGKLAVDQ TVNTTAQYLQ  300
ETDRMASSSS NLSYSFVSDH VNTRISGFSR SMYRSVLADV LQPQNVKNLC SLFVILSRVS  360
AKIDAETEGK IDRQTKAGNS KASVASSAKS LQQTKDGRQP VCDGHVNKAV ADAVDIANYN  420
RPLSPETLAL MCDEQANMFF GNTSADGAAY QNMIQKSLNS DGSSDAAYGE QERLIMTKLL  480
DVLRELVTLG SIKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-2314824247132Protein lin-54 homolog
5fd3_B8e-2314824247132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g08950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500608.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-100TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A1S3U3K60.0A0A1S3U3K6_VIGRR; protein tesmin/TSO1-like CXC 5
STRINGXP_007137192.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151511113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-81Tesmin/TSO1-like CXC domain-containing protein