PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g08670.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 829aa    MW: 90798.9 Da    PI: 6.5512
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g08670.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-192078357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Vradi05g08670.1 20 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                     5679*****************************************************97 PP
2START174.46.8e-551643722205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++a  v+e+l+d++ W ++++ +++l+v s+g  g+++l
  Vradi05g08670.1 164 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPA-RVAEILKDRLSWFRDCRTVDVLNVMSTGngGTIEL 256
                      7899******************************************************.9999999999************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p     +++vRa +lpSg+li+p+++g+s +++v+h+ l+ ++++++lr+
  Vradi05g08670.1 257 LYMQLYAPTTLAPgRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAmppVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRP 350
                      *******************************************99988899******************************************* PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s++  +++t++a+l+++++
  Vradi05g08670.1 351 LYESSMLLAQRTTMAALRHLRQ 372
                      *****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7581579IPR001356Homeobox domain
SMARTSM003891.3E-151783IPR001356Homeobox domain
SuperFamilySSF466895.56E-171982IPR009057Homeodomain-like
CDDcd000861.23E-162080No hitNo description
PfamPF000461.6E-162178IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182278IPR009057Homeodomain-like
CDDcd146863.99E-672111No hitNo description
PROSITE profilePS5084823.648154382IPR002913START domain
CDDcd088751.05E-76158373No hitNo description
Gene3DG3DSA:3.30.530.201.2E-19163369IPR023393START-like domain
SuperFamilySSF559614.67E-35163374No hitNo description
SMARTSM002341.2E-40163373IPR002913START domain
PfamPF018523.8E-52164372IPR002913START domain
PfamPF086706.4E-51687827IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MMAVSSACKD GTKVAMDNGK YVRYTPEQVE ALERLYHECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQGVNR KLTAMNKLLM EENDRLQKQV SQLVYENSFF  120
RQQTQNATVA TTDTSCESVV TSGQRHLTPQ HPPRDASPAG LLSIAEETLA EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIVA ISHGCPGVAA RACGLVGLEP ARVAEILKDR LSWFRDCRTV  240
DVLNVMSTGN GGTIELLYMQ LYAPTTLAPG RDFWLLRYTS LLEDGSLVVC ERSLNNTQNG  300
PAMPPVQHFV RADMLPSGYL IRPCEGGGSI IHIVDHMVLE PWSVPEVLRP LYESSMLLAQ  360
RTTMAALRHL RQISQEVSQP SVTGWGRRPA ALRALSQRLS KGFNEAVNGF ADDGWSMLES  420
DGIDDVTLLV NSSPSKMMGA NLGYNNNGFP SMSSSVLCAK ASMLLQNVPP AILLRFLREH  480
RSEWADSSID AYSAAAIKAG PCSLPGARPG GGFGGQFMEV IKLENMGYYR DDMTIPGDVF  540
LLQLCSGVDE HAVGTSAELV FAPIDASFSD DAPILPSGFR IIPLDSSSDA ASPNRTLDLA  600
SALEVGTTAN KAAGDNSGHS GSTKSVMTIA FQFAFEVHLQ ESIATMARQY VRSIIASVQR  660
VSLALSPSRF GSHNAFHLPP GTPEAQTLAR WISNSYRFYL GVELLKCEGS ESILKSLWHH  720
SDAVLCCSLK ALPVFTFANQ AGLDMLETTL VALQDITLEK IFDDNGKKTL CSEFPQIMQQ  780
GFMCIQGGIC LSSMGRPVSY ERAVAWKVLN EEESAHCICF MFINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g08670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014501941.10.0homeobox-leucine zipper protein ATHB-8 isoform X2
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A4D6NUW10.0A0A4D6NUW1_VIGUN; Homeobox-leucine zipper protein
STRINGXP_007137231.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]