PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g08260.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 318aa    MW: 36168.7 Da    PI: 4.3885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g08260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11155198654
                      HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+r+N++++ Lr ++Pk +      K++  +iL  +++Y+k+L
  Vradi05g08260.1 155 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYMKEL 198
                      589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.237149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-15153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9155198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-5156202No hitNo description
Gene3DG3DSA:4.10.280.102.0E-15156210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEHYDRDFLE ELISTEETQF FCNGWSSFDC IDQNSLPYLP NSSSGQEVPQ SYNDYYPFNE  60
IYGSLLDESS PQIIDSYYST LDTPLNTLGQ EDYPLSFMEE EDPGMLGEEL KNLELQTTCK  120
AEPTQSSEMP VFNIGTGLER KNRSKKLQGQ PSKNLMAERR RRKRLNDRLS MLRAIVPKIS  180
KMDRTSILGD TIDYMKELLE KINNLKQEVE VDSKMACVFK DVKPNEILVR NSPKFEVERS  240
VDTRVEICCA GKQGLLQSTV NTLEALGLEI QQCVISCFND FTMQASCSEE SEQRAMLSSE  300
DIKQALYRSA GYGGRCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157164ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g08260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0969920.0BT096992.1 Soybean clone JCVI-FLGm-21O6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500777.10.0transcription factor bHLH93
SwissprotQ9LSL15e-79BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A1S3U4340.0A0A1S3U434_VIGRR; transcription factor bHLH93
STRINGXP_007137669.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.13e-81beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]