PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g06820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 18594.8 Da PI: 4.0797 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 28 | 5.7e-09 | 50 | 82 | 20 | 55 |
AP2 20 rdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r p ++++r++lg++ t+e Aa+a++aa ++l+g Vradi05g06820.1 50 RAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 82 444...2469***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.17 | 5 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-13 | 45 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-17 | 49 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-11 | 49 | 92 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-4 | 54 | 82 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MSYIDYRGFA SCYLETQASV WLYQSTINSG FLLPTFTSDL ILFPTFRTIR APNQKTRIWL 60 GSYSTPEAAA RAYDAALLCL KGSSANFNFP LSSSQYIPGD AVIYDQANES MAMNEMEPWY 120 TLDDLRSPKY VDQMLSGAFF DVDSSHLLDD LYEESDIRLW NFC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g06820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 6e-86 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014499978.1 | 9e-37 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | I3S908 | 6e-38 | I3S908_LOTJA; Uncharacterized protein | ||||
STRING | XP_004500566.1 | 2e-34 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G44830.1 | 1e-15 | ERF family protein |