PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi05g06640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 298aa MW: 33101.5 Da PI: 7.4518 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.5e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ + Vradi05g06640.1 7 LPPGFRFHPTDEELVMHYLCRKCASQPIAV-PIIAEIDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGH 99 79**************************99.88***************7777799*************************************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++vg+kk Lvfy g+apkg k++W+mheyrl Vradi05g06640.1 100 --PKAVGIKKALVFYAGKAPKGDKSNWIMHEYRL 131 ..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-57 | 4 | 133 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.408 | 7 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MASELQLPPG FRFHPTDEEL VMHYLCRKCA SQPIAVPIIA EIDLYKYDPW DLPGLASYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKPIGHP KAVGIKKALV FYAGKAPKGD 120 KSNWIMHEYR LADVDRSVRK KNSLRKGTIE KLQPSSDPVL TRRIESPEIE EKKPEILKSG 180 GVLPPAPAMT DYMYFDPSDS IPKLHTDSSC SEQVVSPEFA SEVQSEPKWN EISENPPRPQ 240 NSANVSEGGS EECKLGGNGY EAFLEKELKS IMGISKALEC PNKTWGAGSN GLSYVRF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-70 | 3 | 131 | 11 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi05g06640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU661909 | 0.0 | EU661909.1 Glycine max NAC domain protein (NAC7) mRNA, partial cds. | |||
GenBank | EU661911 | 0.0 | EU661911.1 Glycine max NAC domain protein (NAC8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014501798.1 | 1e-166 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-119 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1S3U6Y9 | 1e-165 | A0A1S3U6Y9_VIGRR; NAC domain-containing protein 2 | ||||
STRING | XP_007137423.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-117 | NAC family protein |