PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g03520.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 383aa    MW: 43746.8 Da    PI: 6.3549
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g03520.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.58.3e-09952144
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                     k+i n + r   + kR++ +lK  +E +  C++++++i++  +g
  Vradi05g03520.1  9 KPITNGRDRDLALMKRKKALLKTISEFCSVCGVKACLIMYDGKG 52
                     6899***********************************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-4160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.615161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-13183IPR002100Transcription factor, MADS-box
PfamPF003195.7E-81152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MGRPKLILKP ITNGRDRDLA LMKRKKALLK TISEFCSVCG VKACLIMYDG KGDSPPLTWP  60
QDPIEMHSII QRYERMVFEK IPKNFDLNNF FEMRKNMVDS EIARVQKEIL ETKYPTWHPC  120
FNNLGAEELK NFIARLDCKL EACNQRTVMF KCKKQDEAQF NFKQCLIQPE CVAPNPNQLV  180
FMKDIFQNQL LFAPMNPLNG NLAPSFQHNS EKGSSSQSQK LNFDPNLMQV KAENTGVVDT  240
SNACQTDVLK NPSNKFDVPC DFLDESFNLF DQLGEIQSLN QHWGNNQQDA LVVGGSITTI  300
NGGVTNDTNF HGNQYNIETS LCNYNGVMQS YNYDASWQDI GFQQQNLQNM VTLPSFQPSE  360
DKFRQITTTD TLKICYPNIY FK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g03520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014499017.10.0agamous-like MADS-box protein AGL82
TrEMBLA0A1S3TZ240.0A0A1S3TZ24_VIGRR; agamous-like MADS-box protein AGL82
STRINGXP_007138494.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-10M-type_MADS family protein