PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g02660.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 147aa    MW: 16339 Da    PI: 5.2241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g02660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.47.1e-059263855
                     STCHHHHHHHHHHHHHHH CS
              HLH 38 lsKaeiLekAveYIksLq 55
                     ++Ka+i + A++YI++L+
  Vradi05g02660.1  9 MDKASIIKDAIDYIQHLH 26
                     68**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-6840IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-7841IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSGVCFLQMD KASIIKDAID YIQHLHEQEK IIQAEIMNLE SGMPNKSGSS YDFEQEQLPV  60
LSVAYMGEKI AVVSLTCSKR TDTMVKLCEV FESLKLKIIT ANITSFSGRL HKTVFIEPNG  120
EDKYHLEIKI QTAIAALNEP LSPMSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g02660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150353e-81AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014498755.18e-92transcription factor bHLH35
SwissprotQ2HIV93e-41BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3TYB22e-90A0A1S3TYB2_VIGRR; transcription factor bHLH35
STRINGXP_007138769.16e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-43bHLH family protein