PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g00270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 300aa    MW: 33035.8 Da    PI: 7.5006
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g00270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.51.8e-3038138599
                      -..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
               B3   5 ltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                       tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  + +l
  Vradi05g00270.1  38 VTPSDVGKLNRLVIPKQHAEKYfpldSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGlGDmYRHRL 131
                      689***********************66677899*************************************************76688889999 PP

                      EEEEE-S CS
               B3  93 vvkvfrk 99 
                      ++ ++r+
  Vradi05g00270.1 132 YIDWRRR 138
                      9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.70434139IPR003340B3 DNA binding domain
SMARTSM010191.1E-1834139IPR003340B3 DNA binding domain
CDDcd100174.61E-2438121No hitNo description
Gene3DG3DSA:2.40.330.103.9E-3738140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-2838136IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-2838138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDLIQQVKGT YSDSREEEEE EEVTEIIGIT REAESSMVTP SDVGKLNRLV IPKQHAEKYF  60
PLDSSSNEKG LLLNFEDRNG KVWRFRYSYW NSSQSYVMTK GWSRFVKEKK LDAGDIVSFQ  120
RGLGDMYRHR LYIDWRRRTD HGHPPSDPSA SPLFLPSIRW SSMPMGGGAD QNLAGRGNSI  180
VPMIIDSVPV NVGHHNHRHG HGGMSSGGGS STTSSGKRLR LFGVNMECAS SGEDSKGLSL  240
GSAAHVTVGN SLPSSSSLQQ RLRMPHEDPI SSSARFGDHK GGTGTSLLFD LDPSLQYHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-583714211117B3 domain-containing transcription factor NGA1
5os9_B7e-583714211117B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi05g00270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350624.11e-114B3 domain-containing transcription factor NGA1-like
RefseqXP_027350625.11e-114B3 domain-containing transcription factor NGA1-like
RefseqXP_027350626.11e-114B3 domain-containing transcription factor NGA1-like
SwissprotQ9MAN17e-67NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLA0A151U8D92e-87A0A151U8D9_CAJCA; B3 domain-containing protein Os03g0120900
STRINGXP_007139042.14e-87(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-64B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]