PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi0553s00010.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

Nin-like

Protein Properties

Length: 980aa MW: 108365 Da PI: 6.1445

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi0553s00010.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.8e-29	601	651	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Vradi0553s00010.1 601 EKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 651 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.881	585	671	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-26	603	651	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-20	874	963	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.1E-21	876	958	No hit	No description
PROSITE profile	PS51745	18.78	879	961	IPR000270	PB1 domain
SMART	SM00666	2.5E-19	879	961	IPR000270	PB1 domain
CDD	cd06407	1.00E-30	880	960	No hit	No description
Pfam	PF00564	4.3E-15	882	960	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 980 aa Download sequence Send to blast
MEYPFSSKER EIGDWQSFGN QLVGSTSLDS RMSNSISEDM PNSFSELMNF DTYAGLCTSP 60 SISDQILANE LPSFASLPYS LPDGFNLVQQ NNGQCYMSGV GRNDNDMESS PIYGEKVACQ 120 QVDTLLGFLN DANEANNLNS KLKIIGSSQH LNNSDAGNYI MSRPPALSLD ERMLRALSFF 180 KESAGGGILA QVWVPIKNGD QFILSTSEQP YLLDQMLAGY REVSRTFTFP AEGKSGCFLG 240 LPGRVFTSKV HEWTSDVGYY SMNEYLRFEH AINHHVRGSI AFPIFEMHSE LLCCAVLEIV 300 TTKEKPDFNR EFEIVCRALQ LVNLSTAKPL RCLPQCLSNN KKATLTEIVD VLRSVCHAHR 360 LPLALTWLPC CYTEGSRGEV TRIRTKGCHS TISGKNILCL EESACYITDR ALAGFVRACT 420 EHHIEEGKGI AGKALRSNHP FFCPDVKAYD ISEYPLVHHA RKYNLNAAVA IRLRSTYTNH 480 DDYILEFFLP VNMRGGLEQQ LLLDNLSGTM QRICSSLRTV SDAELSRIDS SQQGFEMKNA 540 PYFPPLSCQN SGVPLINGDY HSVPMMPSTP TNAGGNEIEP SANQGRNGAK RQVQKNRSTS 600 EKNVSLSVLQ QYFSGSLKDA AKNIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLKKIQT 660 VLDSVRGVEG GLKFDPSMGA FVARGSIIQE TDAHKSLLFP EKNIIKDPAH ITQEAVPVPR 720 APCNEVENFS FKLEEELKKT NSFSVGCCED SKSMAIDDGS CEMESLCTKL QDCPEQACLG 780 SVLPKEQEKW TRNKSGLRVE NFKCSILGQS SNSLIGKEMD IGVDGDAEVV EPNHPSSSSL 840 TDSSNDSGSM MHSISSGSES FKNHNQSKVK STIVDSGSKL IVKAIYREDT IRFKFDRSAG 900 CFRLYEEVAA RFKLQTGSFQ LKYLDDEEEW VMLVSDADLQ ECLDILDDIG TCSVRFLVRD 960 LPSILTSSGS SNSYLGGSS*

Sequence ? help Back to Top

Protein Sequence Length: 980 aa Download sequence Send to blast

MEYPFSSKER EIGDWQSFGN QLVGSTSLDS RMSNSISEDM PNSFSELMNF DTYAGLCTSP  60
SISDQILANE LPSFASLPYS LPDGFNLVQQ NNGQCYMSGV GRNDNDMESS PIYGEKVACQ  120
QVDTLLGFLN DANEANNLNS KLKIIGSSQH LNNSDAGNYI MSRPPALSLD ERMLRALSFF  180
KESAGGGILA QVWVPIKNGD QFILSTSEQP YLLDQMLAGY REVSRTFTFP AEGKSGCFLG  240
LPGRVFTSKV HEWTSDVGYY SMNEYLRFEH AINHHVRGSI AFPIFEMHSE LLCCAVLEIV  300
TTKEKPDFNR EFEIVCRALQ LVNLSTAKPL RCLPQCLSNN KKATLTEIVD VLRSVCHAHR  360
LPLALTWLPC CYTEGSRGEV TRIRTKGCHS TISGKNILCL EESACYITDR ALAGFVRACT  420
EHHIEEGKGI AGKALRSNHP FFCPDVKAYD ISEYPLVHHA RKYNLNAAVA IRLRSTYTNH  480
DDYILEFFLP VNMRGGLEQQ LLLDNLSGTM QRICSSLRTV SDAELSRIDS SQQGFEMKNA  540
PYFPPLSCQN SGVPLINGDY HSVPMMPSTP TNAGGNEIEP SANQGRNGAK RQVQKNRSTS  600
EKNVSLSVLQ QYFSGSLKDA AKNIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLKKIQT  660
VLDSVRGVEG GLKFDPSMGA FVARGSIIQE TDAHKSLLFP EKNIIKDPAH ITQEAVPVPR  720
APCNEVENFS FKLEEELKKT NSFSVGCCED SKSMAIDDGS CEMESLCTKL QDCPEQACLG  780
SVLPKEQEKW TRNKSGLRVE NFKCSILGQS SNSLIGKEMD IGVDGDAEVV EPNHPSSSSL  840
TDSSNDSGSM MHSISSGSES FKNHNQSKVK STIVDSGSKL IVKAIYREDT IRFKFDRSAG  900
CFRLYEEVAA RFKLQTGSFQ LKYLDDEEEW VMLVSDADLQ ECLDILDDIG TCSVRFLVRD  960
LPSILTSSGS SNSYLGGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi0553s00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014490160.1	0.0	protein NLP8
Refseq	XP_014490162.1	0.0	protein NLP8
Refseq	XP_014490163.1	0.0	protein NLP8
Refseq	XP_022633030.1	0.0	protein NLP8
Refseq	XP_022633031.1	0.0	protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1S3T8R9	0.0	A0A1S3T8R9_VIGRR; protein NLP8
STRING	XP_007150469.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]