PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g11000.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 382aa    MW: 43116.3 Da    PI: 6.5035
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g11000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC119.12e-37143244299
            NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      l+sfwekq   i+ a+ fk +h+lPlari++i+k+d dv+m+sae+P+l+skace+fi elt r+w++aee++++t++ +d+a+++ + +  +f
  Vradi04g11000.1 143 LRSFWEKQlmdIQAAEAFKsQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTYRAWMRAEESNKSTVQPCDVAKVIMQNHAMQF 236
                      99******977788999*999************************************************************************* PP

            NF-YC  92 lvdivprd 99 
                      l+divp +
  Vradi04g11000.1 237 LTDIVPDN 244
                      *****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-23142236IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.9E-29160228IPR009072Histone-fold
PfamPF008087.1E-17165227IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MLPNSVLRPS CSMSLYLQED REVSNFNLPL DCNNNSLPSN SMSMTPYMMP QFRQDIEGSN  60
CNQAMDFHSN SVSSNVVSNS MLVPSCPILH YHQEKDREQR NTFNLPLDFN SNSASTNVLS  120
NSISMPSYPV PQYRPQNIQE GKLRSFWEKQ LMDIQAAEAF KSQHKLPLAR IRRIMKTDAD  180
VQMVSAETPM LMSKACEIFI QELTYRAWMR AEESNKSTVQ PCDVAKVIMQ NHAMQFLTDI  240
VPDNLQNFCA YGAQEELAAG NIAEGRHSSQ ANLPDTAGFM GNPMNVMNMG RVRLGGRKPA  300
DSSTQQHDAA SLCYAFRSIS LQFSSQVNLG MHYRVMNEVM VCFRTMSSLE ELEQQFTLLI  360
LLKQLLNLFS VLGNIILLKY L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-2414324219118HapE
4g92_C3e-2414324219118HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g11000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-117AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408971.10.0PREDICTED: nuclear transcription factor Y subunit C-3-like isoform X3
TrEMBLA0A0S3RQZ91e-178A0A0S3RQZ9_PHAAN; Uncharacterized protein
STRINGXP_007139192.11e-140(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1821366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.32e-31nuclear factor Y, subunit C3