PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi04g09800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 196aa MW: 22548.1 Da PI: 6.4143 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 47.6 | 3.6e-15 | 84 | 133 | 5 | 54 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++ rr+++NRe+ArrsR RK++ ++eL v L +eN++L ++l++ ++ Vradi04g09800.1 84 RKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSE 133 578*****************************************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.9E-13 | 80 | 144 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.726 | 82 | 145 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.9E-12 | 84 | 156 | No hit | No description |
Pfam | PF00170 | 6.3E-13 | 84 | 134 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.55E-13 | 84 | 134 | No hit | No description |
CDD | cd14702 | 2.37E-18 | 85 | 136 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 87 | 102 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 196 aa Download sequence Send to blast |
MQAREITGLN YLLPSDPCPY PGHYSMTQNT IPTFQLHKLS NQFYGFQNPQ QMVAEFSPPQ 60 SSCISSTSTS DEADEQQQSL INERKHRRMI SNRESARRSR MRKQKHLDEL WSQVVWLRNE 120 NHQLMDKLNH VSESHDRVSQ ENVQLREEAS ELRQMICDMQ LHSPYHAPSL CPIDDDVSPY 180 VKSDSSITSS SNLLG* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 96 | 103 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00647 | PBM | Transfer from LOC_Os02g49560 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi04g09800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014497360.1 | 1e-144 | basic leucine zipper 43 | ||||
Swissprot | Q9FMC2 | 1e-42 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A1S3TUD6 | 1e-143 | A0A1S3TUD6_VIGRR; basic leucine zipper 43 | ||||
STRING | GLYMA18G51250.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1604 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G30530.1 | 2e-48 | basic leucine-zipper 42 |
Publications ? help Back to Top | |||
---|---|---|---|
|