PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g09800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bZIP
Protein Properties Length: 196aa    MW: 22548.1 Da    PI: 6.4143
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g09800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.63.6e-1584133554
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                      ++ rr+++NRe+ArrsR RK++ ++eL   v  L +eN++L ++l++ ++
  Vradi04g09800.1  84 RKHRRMISNRESARRSRMRKQKHLDELWSQVVWLRNENHQLMDKLNHVSE 133
                      578*****************************************999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.9E-1380144IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.72682145IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-1284156No hitNo description
PfamPF001706.3E-1384134IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.55E-1384134No hitNo description
CDDcd147022.37E-1885136No hitNo description
PROSITE patternPS00036087102IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQAREITGLN YLLPSDPCPY PGHYSMTQNT IPTFQLHKLS NQFYGFQNPQ QMVAEFSPPQ  60
SSCISSTSTS DEADEQQQSL INERKHRRMI SNRESARRSR MRKQKHLDEL WSQVVWLRNE  120
NHQLMDKLNH VSESHDRVSQ ENVQLREEAS ELRQMICDMQ LHSPYHAPSL CPIDDDVSPY  180
VKSDSSITSS SNLLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g09800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497360.11e-144basic leucine zipper 43
SwissprotQ9FMC21e-42BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A1S3TUD61e-143A0A1S3TUD6_VIGRR; basic leucine zipper 43
STRINGGLYMA18G51250.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16043399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-48basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]