PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g09280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | TCP | ||||||||
Protein Properties | Length: 386aa MW: 43026.3 Da PI: 9.7093 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.6 | 1.6e-32 | 82 | 195 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaess 78 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ + + ++e+ ++ Vradi04g09280.1 82 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLpiipsvnnftlgypsavT---SNEA---TN 169 689*************************************************************555444444443332110...1111...11 PP TCP 79 sssasnsssg...............k 89 s s+s+++++ + Vradi04g09280.1 170 SHSHSQPNEQlninnsihwqgsdqnS 195 11111122222233444454322220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.337 | 84 | 142 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 9.2E-30 | 84 | 211 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0009507 | Cellular Component | chloroplast |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MVPWNRILTS IKWKDKTLHL ATNNEIHKIM IKSPKEVDFA LKQEGGHSQS ISDPEKAKAP 60 SSSAAQWPRL KDPRIVRVSR AFGGKDRHSK VCTIRGLRDR RVRLSVPTAI QLYDLQDRLG 120 LSQPSKVVDW LLNAAKHEID ELPPLPIIPS VNNFTLGYPS AVTSNEATNS HSHSQPNEQL 180 NINNSIHWQG SDQNSSWKLK RKEVSGEMIS TDKASWINRS EEDKQGSNNE VPSTHVMPNN 240 LLPRVNHPSF LGLLNTMPQG YQWEASASDV SHPQLENNGF SNQTDIHNIN VVPFPTSTLS 300 LSRGNSQILL CPPGAAQSYF PSHFTAMDMD QRQINHYQML SSGSQNPLAN SLNHSFSLAM 360 MSHKPLHSPN SSKSPSHKDQ DFPSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-18 | 89 | 143 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-18 | 89 | 143 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00326 | DAP | Transfer from AT3G02150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g09280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496630.1 | 0.0 | transcription factor TCP17 | ||||
Refseq | XP_022635760.1 | 0.0 | transcription factor TCP17 | ||||
TrEMBL | A0A1S3TS82 | 0.0 | A0A1S3TS82_VIGRR; transcription factor TCP17 | ||||
STRING | XP_007132732.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 4e-41 | plastid transcription factor 1 |