PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi04g08980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 407aa MW: 45987.7 Da PI: 4.3529 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.6e-19 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Vradi04g08980.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.63E-32 | 41 | 98 | No hit | No description |
SMART | SM00380 | 4.4E-35 | 42 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.559 | 42 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 42 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-27 | 42 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MARKRKASEE GKERNLSDET MAWDEVMKEA AALGSGRKLR KRFVGVRQRP SGRWVAEIKD 60 TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP GYQSSSTPAL PSKITNLLLQ 120 RLKARNDTRT KPCTVSSSSS STSLIINQQQ SQQEDVHGNE STYFTLDQFS DFLNDPEDYS 180 TNNNEFSNDS AQIDCITNSL ESCLNENDDC RENEKEMEME FDFNSVTQTS SADVNSGGER 240 EEDSEEGTDL SAQDFQFLDN VVPSSYHYSL FEITEEIEEQ LEAENCGDEP PMFREVLKRM 300 KYERKFSASL YAFNGIPECL KLKVESGNKH RSEVCISNEL TNLKMACSKN KIEVIEKNEE 360 HIEAMDRKET QTSVGMDCSS PSFSSSIDDE LLLWNSLDLP TVCCVN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi04g08980.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014496870.1 | 0.0 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A1S3TSZ7 | 0.0 | A0A1S3TSZ7_VIGRR; ethylene-responsive transcription factor ERF118-like | ||||
STRING | XP_007139548.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-23 | related to AP2 11 |