PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g08530.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family AP2
Protein Properties Length: 318aa    MW: 35270.1 Da    PI: 8.9204
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g08530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.31.4e-1171125153
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkl 53 
                      s+++GV++++++gr++A+++d  s+n   k+k  + g ++ +e Aa+a++ a++k+
  Vradi04g08530.1  71 SKFRGVSRHRWTGRYEAHLWDkLSWNItqKKKGKQ-GAYDEEESAARAYDLAALKK 125
                      79*******************88887784446666.9****************986 PP
2AP229.91.4e-09134167137
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++g
  Vradi04g08530.1 134 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYG 167
                      89****99**********99966...3.6********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-1071126IPR016177DNA-binding domain
PfamPF008471.7E-871125IPR001471AP2/ERF domain
CDDcd000181.37E-1271124No hitNo description
Gene3DG3DSA:3.30.730.105.0E-872124IPR001471AP2/ERF domain
PROSITE profilePS5103214.07872124IPR001471AP2/ERF domain
SMARTSM003809.4E-572127IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-5134168IPR016177DNA-binding domain
PfamPF008476.1E-6134167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-4135166IPR001471AP2/ERF domain
PROSITE profilePS510328.887135194IPR001471AP2/ERF domain
SMARTSM003800.0032135185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEMMKHNIIE VSLGKSQISM AEGDLQATRC VKRRRREVAA AVSSGDDSHQ QQLPKQHGGE  60
NSTINTTKRS SKFRGVSRHR WTGRYEAHLW DKLSWNITQK KKGKQGAYDE EESAARAYDL  120
AALKKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY LYLGTYGGVS TPEAKLETQA  180
VLEGQKVASP SNYSLTEESK SSVIHNSFFS LDSLNSPVGQ ENFGNKPYPF SSSKSSSPTA  240
LGLLLRSSLF RELVEKNSNV SGDEADDGEV TKSEQPQIAS DDDLGGIFFD SIGDIPFVCD  300
PNRYNLELQE RDLHSIF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g08530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496860.10.0AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S3TSY90.0A0A1S3TSY9_VIGRR; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_007139600.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-50AP2 family protein